Literature DB >> 18803370

Modeling oral rat chronic toxicity.

Paolo Mazzatorta1, Manuel Dominguez Estevez, Myriam Coulet, Benoit Schilter.   

Abstract

The chronic toxicity is fundamental for toxicological risk assessment, but its correlation with the chemical structures has been studied only little. This is partly due to the complexity of such an experimental test that embraces a plethora of different biological effects and mechanisms of action, making (Q)SAR studies extremely challenging. In this paper we report a predictive in silico study of more than 400 compounds based on two-dimensional chemical descriptors and multivariate analysis. The root mean squared error of the predictive model is 0.73 (in a logarithmic scale) on a leave-one-out cross-validation and is close to the estimated variability of experimental values (0.64). The analysis of the model revealed that the chronic toxicity effects are driven by the bioavailability of the compound that constitutes a baseline effect plus excess toxicity possible described by a few chemical moieties. The results obtained give confidence that this model can be useful for establishing a level of safety concern in the absence of hard toxicological data.

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Year:  2008        PMID: 18803370     DOI: 10.1021/ci8001974

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  9 in total

1.  QSAR as a random event: a case of NOAEL.

Authors:  Alla P Toropova; Andrey A Toropov; Jovana B Veselinović; Aleksandar M Veselinović
Journal:  Environ Sci Pollut Res Int       Date:  2014-12-19       Impact factor: 4.223

2.  Variability in in vivo studies: Defining the upper limit of performance for predictions of systemic effect levels.

Authors:  Ly Ly Pham; Sean Watford; Prachi Pradeep; Matthew T Martin; Russell Thomas; Richard Judson; R Woodrow Setzer; Katie Paul Friedman
Journal:  Comput Toxicol       Date:  2020-08-01

3.  In Silico Models for Repeated-Dose Toxicity (RDT): Prediction of the No Observed Adverse Effect Level (NOAEL) and Lowest Observed Adverse Effect Level (LOAEL) for Drugs.

Authors:  Fabiola Pizzo; Domenico Gadaleta; Emilio Benfenati
Journal:  Methods Mol Biol       Date:  2022

4.  Identification of structural alerts for liver and kidney toxicity using repeated dose toxicity data.

Authors:  Fabiola Pizzo; Domenico Gadaleta; Anna Lombardo; Orazio Nicolotti; Emilio Benfenati
Journal:  Chem Cent J       Date:  2015-11-05       Impact factor: 4.215

5.  CORAL: model for no observed adverse effect level (NOAEL).

Authors:  Andrey A Toropov; Alla P Toropova; Fabiola Pizzo; Anna Lombardo; Domenico Gadaleta; Emilio Benfenati
Journal:  Mol Divers       Date:  2015-04-08       Impact factor: 2.943

6.  Acute Toxicity-Supported Chronic Toxicity Prediction: A k-Nearest Neighbor Coupled Read-Across Strategy.

Authors:  Swapnil Chavan; Ran Friedman; Ian A Nicholls
Journal:  Int J Mol Sci       Date:  2015-05-21       Impact factor: 5.923

7.  pkCSM: Predicting Small-Molecule Pharmacokinetic and Toxicity Properties Using Graph-Based Signatures.

Authors:  Douglas E V Pires; Tom L Blundell; David B Ascher
Journal:  J Med Chem       Date:  2015-04-22       Impact factor: 7.446

8.  Modeling Chronic Toxicity: A Comparison of Experimental Variability With (Q)SAR/Read-Across Predictions.

Authors:  Christoph Helma; David Vorgrimmler; Denis Gebele; Martin Gütlein; Barbara Engeli; Jürg Zarn; Benoit Schilter; Elena Lo Piparo
Journal:  Front Pharmacol       Date:  2018-04-25       Impact factor: 5.810

9.  cropCSM: designing safe and potent herbicides with graph-based signatures.

Authors:  Douglas E V Pires; Keith A Stubbs; Joshua S Mylne; David B Ascher
Journal:  Brief Bioinform       Date:  2022-03-10       Impact factor: 13.994

  9 in total

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