Literature DB >> 18802606

Nitrogen-15 NMR spectroscopy of N-metallated nucleic acids: insights into 15N NMR parameters and N-metal bonds.

Yoshiyuki Tanaka1, Akira Ono.   

Abstract

It was recently demonstrated spectroscopically that RNA/DNA nucleobases can bind to metal cations in aqueous solution through coordination bonds and covalent bonds. Nitrogen-15 (15N) NMR spectroscopy was employed and shown to be a powerful tool for determining the mode of metal ion binding to nitrogen atoms in RNA/DNA molecules. This review describes 15N NMR spectroscopic characteristics in accordance with the mode of metal ion binding to nitrogen atoms. The general rules for 15N chemical shift changes, which are applicable to the determination of the metal ion binding mode of N-metallated compounds, are also described.

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Year:  2008        PMID: 18802606     DOI: 10.1039/b803510p

Source DB:  PubMed          Journal:  Dalton Trans        ISSN: 1477-9226            Impact factor:   4.390


  9 in total

1.  Modulation of RNA metal binding by flanking bases: 15N NMR evaluation of GC, tandem GU, and tandem GA sites.

Authors:  Weimin Wang; Jianwei Zhao; Qianwei Han; Gang Wang; Gengcheng Yang; Anthony J Shallop; Jane Liu; Barbara L Gaffney; Roger A Jones
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2009-05       Impact factor: 1.381

2.  Evaluation of 15N-detected H-N correlation experiments on increasingly large RNAs.

Authors:  Robbin Schnieders; Christian Richter; Sven Warhaut; Vanessa de Jesus; Sara Keyhani; Elke Duchardt-Ferner; Heiko Keller; Jens Wöhnert; Lars T Kuhn; Alexander L Breeze; Wolfgang Bermel; Harald Schwalbe; Boris Fürtig
Journal:  J Biomol NMR       Date:  2017-09-06       Impact factor: 2.835

3.  Solution structure of a DNA double helix with consecutive metal-mediated base pairs.

Authors:  Silke Johannsen; Nicole Megger; Dominik Böhme; Roland K O Sigel; Jens Müller
Journal:  Nat Chem       Date:  2010-01-17       Impact factor: 24.427

4.  Studying metal ion binding properties of a three-way junction RNA by heteronuclear NMR.

Authors:  Simona Bartova; Maria Pechlaner; Daniela Donghi; Roland K O Sigel
Journal:  J Biol Inorg Chem       Date:  2016-02-15       Impact factor: 3.358

5.  Raman spectroscopic detection of the T-Hg II-T base pair and the ionic characteristics of mercury.

Authors:  Tomomi Uchiyama; Takashi Miura; Hideo Takeuchi; Takenori Dairaku; Tomoyuki Komuro; Takuya Kawamura; Yoshinori Kondo; Ladislav Benda; Vladimír Sychrovsky; Petr Bour; Itaru Okamoto; Akira Ono; Yoshiyuki Tanaka
Journal:  Nucleic Acids Res       Date:  2012-03-01       Impact factor: 16.971

6.  The structural stabilization of the κ three-way junction by Mg(II) represents the first step in the folding of a group II intron.

Authors:  Daniela Donghi; Maria Pechlaner; Cinzia Finazzo; Bernd Knobloch; Roland K O Sigel
Journal:  Nucleic Acids Res       Date:  2012-12-28       Impact factor: 16.971

7.  Site-specific isotope labeling of long RNA for structural and mechanistic studies.

Authors:  Ikumi Kawahara; Kaichiro Haruta; Yuta Ashihara; Daichi Yamanaka; Mituhiro Kuriyama; Naoko Toki; Yoshinori Kondo; Kenta Teruya; Junya Ishikawa; Hiroyuki Furuta; Yoshiya Ikawa; Chojiro Kojima; Yoshiyuki Tanaka
Journal:  Nucleic Acids Res       Date:  2011-11-12       Impact factor: 16.971

8.  Concerted dynamics of metallo-base pairs in an A/B-form helical transition.

Authors:  Olivia P Schmidt; Simon Jurt; Silke Johannsen; Ashkan Karimi; Roland K O Sigel; Nathan W Luedtke
Journal:  Nat Commun       Date:  2019-10-23       Impact factor: 14.919

9.  The structure of metallo-DNA with consecutive thymine-HgII-thymine base pairs explains positive entropy for the metallo base pair formation.

Authors:  Hiroshi Yamaguchi; Jakub Sebera; Jiro Kondo; Shuji Oda; Tomoyuki Komuro; Takuya Kawamura; Takenori Dairaku; Yoshinori Kondo; Itaru Okamoto; Akira Ono; Jaroslav V Burda; Chojiro Kojima; Vladimír Sychrovský; Yoshiyuki Tanaka
Journal:  Nucleic Acids Res       Date:  2013-12-26       Impact factor: 16.971

  9 in total

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