Literature DB >> 18800774

Role of short-range electrostatics in torsional potentials.

Michael G Darley1, Paul L A Popelier.   

Abstract

A force field needs to decide if it should contain a torsional potential or not. A helpful guide to this decision should come from a quantum mechanical energy partitioning. Here we analyze the energy profiles of eight simple molecules (ethane, hydrogen peroxide, hydrazine, methanol, acetaldehyde, formamide, acetamide and N-methylacetamide) subject to rotation around a torsion angle. Coulomb interaction energies between all atom pairs in a molecule are monitored during the rotation. Atoms are defined as finite electron density fragments by quantum chemical topology, a method that enables well-defined short-range interactions (1-2, 1-3 and 1-4). Energy profiles of Coulomb interaction energies mostly counteract the ab initio energy profiles. This and future work strives to settle ambiguities in current force field design.

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Year:  2008        PMID: 18800774     DOI: 10.1021/jp803271w

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  7 in total

1.  Experimentally assessing molecular dynamics sampling of the protein native state conformational distribution.

Authors:  Griselda Hernández; Janet S Anderson; David M LeMaster
Journal:  Biophys Chem       Date:  2012-02-14       Impact factor: 2.352

2.  Assessing the native state conformational distribution of ubiquitin by peptide acidity.

Authors:  Griselda Hernández; Janet S Anderson; David M LeMaster
Journal:  Biophys Chem       Date:  2010-10-15       Impact factor: 2.352

3.  Polarizable intermolecular potentials for water and benzene interacting with halide and metal ions.

Authors:  Fabien Archambault; Christophe Chipot; Ignacio Soteras; F Javier Luque; Klaus Schulten; François Dehez
Journal:  J Chem Theory Comput       Date:  2009-01-01       Impact factor: 6.006

Review 4.  Conformational energy range of ligands in protein crystal structures: The difficult quest for accurate understanding.

Authors:  Megan L Peach; Raul E Cachau; Marc C Nicklaus
Journal:  J Mol Recognit       Date:  2017-02-24       Impact factor: 2.137

5.  Non-covalent interactions from a Quantum Chemical Topology perspective.

Authors:  Paul L A Popelier
Journal:  J Mol Model       Date:  2022-08-25       Impact factor: 2.172

6.  Using the Relative Energy Gradient Method with Interacting Quantum Atoms to Determine the Reaction Mechanism and Catalytic Effects in the Peptide Hydrolysis in HIV-1 Protease.

Authors:  Joseph C R Thacker; Mark A Vincent; Paul L A Popelier
Journal:  Chemistry       Date:  2018-07-03       Impact factor: 5.236

7.  The ANANKE relative energy gradient (REG) method to automate IQA analysis over configurational change.

Authors:  Joseph C R Thacker; Paul L A Popelier
Journal:  Theor Chem Acc       Date:  2017-07-05       Impact factor: 1.702

  7 in total

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