Literature DB >> 18799483

BEST: Bayesian estimation of species trees under the coalescent model.

Liang Liu1.   

Abstract

UNLABELLED: BEST implements a Bayesian hierarchical model to jointly estimate gene trees and the species tree from multilocus sequences. It provides a new option for estimating species phylogenies within the popular Bayesian phylogenetic program MrBayes. The technique of simulated annealing is adopted along with Metropolis coupling as performed in MrBayes to improve the convergence rate of the Markov Chain Monte Carlo algorithm. AVAILABILITY: http://www.stat.osu.edu/~dkp/BEST.

Mesh：

Year:  2008        PMID： 18799483     DOI： 10.1093/bioinformatics/btn484

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  88 in total

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6.  Fast and consistent estimation of species trees using supermatrix rooted triples.

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7.  Multi-locus species tree of the chub genus Squalius (Leuciscinae: Cyprinidae) from western Iberia: new insights into its evolutionary history.

Authors:  Silke Waap; Ana R Amaral; Bruno Gomes; M Manuela Coelho
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8.  A maximum pseudo-likelihood approach for estimating species trees under the coalescent model.

Authors:  Liang Liu; Lili Yu; Scott V Edwards
Journal:  BMC Evol Biol       Date:  2010-10-11       Impact factor: 3.260

9.  On the phylogenetic position of Myzostomida: can 77 genes get it wrong?

Authors:  Christoph Bleidorn; Lars Podsiadlowski; Min Zhong; Igor Eeckhaut; Stefanie Hartmann; Kenneth M Halanych; Ralph Tiedemann
Journal:  BMC Evol Biol       Date:  2009-07-01       Impact factor: 3.260

10.  Phylogenetic analysis of seven WRKY genes across the palm subtribe Attaleinae (Arecaceae) [corrected] identifies Syagrus as sister group of the coconut.

Authors:  Alan W Meerow; Larry Noblick; James W Borrone; Thomas L P Couvreur; Margarita Mauro-Herrera; William J Hahn; David N Kuhn; Kyoko Nakamura; Nora H Oleas; Raymond J Schnell
Journal:  PLoS One       Date:  2009-10-06       Impact factor: 3.240
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