Literature DB >> 18796476

MonkeySNP: a web portal for non-human primate single nucleotide polymorphisms.

Samone Khouangsathiene1, Carlo Pearson, Summer Street, Betsy Ferguson, Christopher Dubay.   

Abstract

UNLABELLED: MonkeySNP is a web-based resource created by the Genetic Resource and Informatics Program at the Oregon National Primate Research Center to facilitate access to non-human primate (NHP) single nucleotide polymorphisms (SNP) data. MonkeySNP is a mirror of the NCBI dbSNP database and contains additional NHP subpopulation genotype data and visual genotype displays to support SNP review and selection. AVAILABILITY: http://monkeysnp.ohsu.edu/snp/ SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

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Year:  2008        PMID： 18796476      PMCID： PMC2579713          DOI： 10.1093/bioinformatics/btn493

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  5 in total

1.  Genetic characterization of Indian-origin and Chinese-origin rhesus macaques (Macaca mulatta).

Authors:  David Glenn Smith
Journal:  Comp Med       Date:  2005-06       Impact factor: 0.982

2.  Demographic histories and patterns of linkage disequilibrium in Chinese and Indian rhesus macaques.

Authors:  Ryan D Hernandez; Melissa J Hubisz; David A Wheeler; David G Smith; Betsy Ferguson; Jeffrey Rogers; Lynne Nazareth; Amit Indap; Traci Bourquin; John McPherson; Donna Muzny; Richard Gibbs; Rasmus Nielsen; Carlos D Bustamante
Journal:  Science       Date:  2007-04-13       Impact factor: 47.728

3.  Evolutionary and biomedical insights from the rhesus macaque genome.

Authors:  Richard A Gibbs; Jeffrey Rogers; Michael G Katze; Roger Bumgarner; George M Weinstock; Elaine R Mardis; Karin A Remington; Robert L Strausberg; J Craig Venter; Richard K Wilson; Mark A Batzer; Carlos D Bustamante; Evan E Eichler; Matthew W Hahn; Ross C Hardison; Kateryna D Makova; Webb Miller; Aleksandar Milosavljevic; Robert E Palermo; Adam Siepel; James M Sikela; Tony Attaway; Stephanie Bell; Kelly E Bernard; Christian J Buhay; Mimi N Chandrabose; Marvin Dao; Clay Davis; Kimberly D Delehaunty; Yan Ding; Huyen H Dinh; Shannon Dugan-Rocha; Lucinda A Fulton; Ramatu Ayiesha Gabisi; Toni T Garner; Jennifer Godfrey; Alicia C Hawes; Judith Hernandez; Sandra Hines; Michael Holder; Jennifer Hume; Shalini N Jhangiani; Vandita Joshi; Ziad Mohid Khan; Ewen F Kirkness; Andrew Cree; R Gerald Fowler; Sandra Lee; Lora R Lewis; Zhangwan Li; Yih-Shin Liu; Stephanie M Moore; Donna Muzny; Lynne V Nazareth; Dinh Ngoc Ngo; Geoffrey O Okwuonu; Grace Pai; David Parker; Heidie A Paul; Cynthia Pfannkoch; Craig S Pohl; Yu-Hui Rogers; San Juana Ruiz; Aniko Sabo; Jireh Santibanez; Brian W Schneider; Scott M Smith; Erica Sodergren; Amanda F Svatek; Teresa R Utterback; Selina Vattathil; Wesley Warren; Courtney Sherell White; Asif T Chinwalla; Yucheng Feng; Aaron L Halpern; Ladeana W Hillier; Xiaoqiu Huang; Pat Minx; Joanne O Nelson; Kymberlie H Pepin; Xiang Qin; Granger G Sutton; Eli Venter; Brian P Walenz; John W Wallis; Kim C Worley; Shiaw-Pyng Yang; Steven M Jones; Marco A Marra; Mariano Rocchi; Jacqueline E Schein; Robert Baertsch; Laura Clarke; Miklós Csürös; Jarret Glasscock; R Alan Harris; Paul Havlak; Andrew R Jackson; Huaiyang Jiang; Yue Liu; David N Messina; Yufeng Shen; Henry Xing-Zhi Song; Todd Wylie; Lan Zhang; Ewan Birney; Kyudong Han; Miriam K Konkel; Jungnam Lee; Arian F A Smit; Brygg Ullmer; Hui Wang; Jinchuan Xing; Richard Burhans; Ze Cheng; John E Karro; Jian Ma; Brian Raney; Xinwei She; Michael J Cox; Jeffery P Demuth; Laura J Dumas; Sang-Gook Han; Janet Hopkins; Anis Karimpour-Fard; Young H Kim; Jonathan R Pollack; Tomas Vinar; Charles Addo-Quaye; Jeremiah Degenhardt; Alexandra Denby; Melissa J Hubisz; Amit Indap; Carolin Kosiol; Bruce T Lahn; Heather A Lawson; Alison Marklein; Rasmus Nielsen; Eric J Vallender; Andrew G Clark; Betsy Ferguson; Ryan D Hernandez; Kashif Hirani; Hildegard Kehrer-Sawatzki; Jessica Kolb; Shobha Patil; Ling-Ling Pu; Yanru Ren; David Glenn Smith; David A Wheeler; Ian Schenck; Edward V Ball; Rui Chen; David N Cooper; Belinda Giardine; Fan Hsu; W James Kent; Arthur Lesk; David L Nelson; William E O'brien; Kay Prüfer; Peter D Stenson; James C Wallace; Hui Ke; Xiao-Ming Liu; Peng Wang; Andy Peng Xiang; Fan Yang; Galt P Barber; David Haussler; Donna Karolchik; Andy D Kern; Robert M Kuhn; Kayla E Smith; Ann S Zwieg
Journal:  Science       Date:  2007-04-13       Impact factor: 47.728

4.  Single nucleotide polymorphisms (SNPs) distinguish Indian-origin and Chinese-origin rhesus macaques (Macaca mulatta).

Authors:  Betsy Ferguson; Summer L Street; Hollis Wright; Carlo Pearson; Yibing Jia; Shaun L Thompson; Patrick Allibone; Christopher J Dubay; Eliot Spindel; Robert B Norgren
Journal:  BMC Genomics       Date:  2007-02-07       Impact factor: 3.969

5.  MamuSNP: a resource for Rhesus Macaque (Macaca mulatta) genomics.

Authors:  Ripan S Malhi; Brad Sickler; Dawei Lin; Jessica Satkoski; Raul Y Tito; Debbie George; Sreetharan Kanthaswamy; David Glenn Smith
Journal:  PLoS One       Date:  2007-05-09       Impact factor: 3.240
  5 in total
  3 in total

1.  Characterization of single-nucleotide variation in Indian-origin rhesus macaques (Macaca mulatta).

Authors:  Gloria L Fawcett; Muthuswamy Raveendran; David Rio Deiros; David Chen; Fuli Yu; Ronald Alan Harris; Yanru Ren; Donna M Muzny; Jeffrey G Reid; David A Wheeler; Kimberly C Worley; Steven E Shelton; Ned H Kalin; Aleksandar Milosavljevic; Richard Gibbs; Jeffrey Rogers
Journal:  BMC Genomics       Date:  2011-06-13       Impact factor: 3.969

2.  Genome sequence and global sequence variation map with 5.5 million SNPs in Chinese rhesus macaque.

Authors:  Xiaodong Fang; Yanfeng Zhang; Rui Zhang; Lixin Yang; Ming Li; Kaixiong Ye; Xiaosen Guo; Jun Wang; Bing Su
Journal:  Genome Biol       Date:  2011-07-06       Impact factor: 13.583

3.  RhesusBase: a knowledgebase for the monkey research community.

Authors:  Shi-Jian Zhang; Chu-Jun Liu; Mingming Shi; Lei Kong; Jia-Yu Chen; Wei-Zhen Zhou; Xiaotong Zhu; Peng Yu; Jue Wang; Xinzhuang Yang; Ning Hou; Zhiqiang Ye; Rongli Zhang; Ruiping Xiao; Xiuqin Zhang; Chuan-Yun Li
Journal:  Nucleic Acids Res       Date:  2012-09-10       Impact factor: 16.971
  3 in total

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