Literature DB >> 18794846

A functional RNAi screen links O-GlcNAc modification of ribosomal proteins to stress granule and processing body assembly.

Takbum Ohn1, Nancy Kedersha, Tyler Hickman, Sarah Tisdale, Paul Anderson.   

Abstract

Stress granules (SGs) and processing bodies (PBs) are microscopically visible ribonucleoprotein granules that cooperatively regulate the translation and decay of messenger RNA. Using an RNA-mediated interference-based screen, we identify 101 human genes required for SG assembly, 39 genes required for PB assembly, and 31 genes required for coordinate SG and PB assembly. Although 51 genes encode proteins involved in mRNA translation, splicing and transcription, most are not obviously associated with RNA metabolism. We find that several components of the hexosamine biosynthetic pathway, which reversibly modifies proteins with O-linked N-acetylglucosamine (O-GlcNAc) in response to stress, are required for SG and PB assembly. O-GlcNAc-modified proteins are prominent components of SGs but not PBs, and include RACK1 (receptor for activated C kinase 1), prohibitin-2, glyceraldehyde-3-phosphate dehydrogenase and numerous ribosomal proteins. Our results suggest that O-GlcNAc modification of the translational machinery is required for aggregation of untranslated messenger ribonucleoproteins into SGs. The lack of enzymes of the hexosamine biosynthetic pathway in budding yeast may contribute to differences between mammalian SGs and related yeast EGP (eIF4E, 4G and Pab1 containing) bodies.

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Year:  2008        PMID: 18794846      PMCID: PMC4318256          DOI: 10.1038/ncb1783

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.824


  35 in total

1.  Evidence that ternary complex (eIF2-GTP-tRNA(i)(Met))-deficient preinitiation complexes are core constituents of mammalian stress granules.

Authors:  Nancy Kedersha; Samantha Chen; Natalie Gilks; Wei Li; Ira J Miller; Joachim Stahl; Paul Anderson
Journal:  Mol Biol Cell       Date:  2002-01       Impact factor: 4.138

2.  Dynamic O-GlcNAc modification of nucleocytoplasmic proteins in response to stress. A survival response of mammalian cells.

Authors:  Natasha E Zachara; Niall O'Donnell; Win D Cheung; Jessica J Mercer; Jamey D Marth; Gerald W Hart
Journal:  J Biol Chem       Date:  2004-05-11       Impact factor: 5.157

3.  Stress granule assembly is mediated by prion-like aggregation of TIA-1.

Authors:  Natalie Gilks; Nancy Kedersha; Maranatha Ayodele; Lily Shen; Georg Stoecklin; Laura M Dember; Paul Anderson
Journal:  Mol Biol Cell       Date:  2004-09-15       Impact factor: 4.138

Review 4.  P bodies: at the crossroads of post-transcriptional pathways.

Authors:  Ana Eulalio; Isabelle Behm-Ansmant; Elisa Izaurralde
Journal:  Nat Rev Mol Cell Biol       Date:  2007-01       Impact factor: 94.444

5.  P-body formation is a consequence, not the cause, of RNA-mediated gene silencing.

Authors:  Ana Eulalio; Isabelle Behm-Ansmant; Daniel Schweizer; Elisa Izaurralde
Journal:  Mol Cell Biol       Date:  2007-04-02       Impact factor: 4.272

Review 6.  Stress granules: the Tao of RNA triage.

Authors:  Paul Anderson; Nancy Kedersha
Journal:  Trends Biochem Sci       Date:  2008-03       Impact factor: 13.807

7.  ARE-mRNA degradation requires the 5'-3' decay pathway.

Authors:  Georg Stoecklin; Thomas Mayo; Paul Anderson
Journal:  EMBO Rep       Date:  2006-01       Impact factor: 8.807

8.  The deacetylase HDAC6 is a novel critical component of stress granules involved in the stress response.

Authors:  Sohee Kwon; Yu Zhang; Patrick Matthias
Journal:  Genes Dev       Date:  2007-12-15       Impact factor: 11.361

Review 9.  Ins (endocytosis) and outs (exocytosis) of GLUT4 trafficking.

Authors:  June Chunqiu Hou; Jeffrey E Pessin
Journal:  Curr Opin Cell Biol       Date:  2007-07-17       Impact factor: 8.382

10.  Stress granules and processing bodies are dynamically linked sites of mRNP remodeling.

Authors:  Nancy Kedersha; Georg Stoecklin; Maranatha Ayodele; Patrick Yacono; Jens Lykke-Andersen; Marvin J Fritzler; Donalyn Scheuner; Randal J Kaufman; David E Golan; Paul Anderson
Journal:  J Cell Biol       Date:  2005-06-20       Impact factor: 10.539

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  200 in total

1.  O-linked beta-N-acetylglucosamine (O-GlcNAc) regulates stress-induced heat shock protein expression in a GSK-3beta-dependent manner.

Authors:  Zahra Kazemi; Hana Chang; Sarah Haserodt; Cathrine McKen; Natasha E Zachara
Journal:  J Biol Chem       Date:  2010-10-06       Impact factor: 5.157

Review 2.  P-bodies and stress granules: possible roles in the control of translation and mRNA degradation.

Authors:  Carolyn J Decker; Roy Parker
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-09-01       Impact factor: 10.005

Review 3.  Stress granules and cell signaling: more than just a passing phase?

Authors:  Nancy Kedersha; Pavel Ivanov; Paul Anderson
Journal:  Trends Biochem Sci       Date:  2013-09-10       Impact factor: 13.807

4.  Stress Granules and Virus Replication.

Authors:  Cathy L Miller
Journal:  Future Virol       Date:  2011       Impact factor: 1.831

5.  Combined Antibody/Lectin Enrichment Identifies Extensive Changes in the O-GlcNAc Sub-proteome upon Oxidative Stress.

Authors:  Albert Lee; Devin Miller; Roger Henry; Venkata D P Paruchuri; Robert N O'Meally; Tatiana Boronina; Robert N Cole; Natasha E Zachara
Journal:  J Proteome Res       Date:  2016-10-14       Impact factor: 4.466

Review 6.  The Role of RNA in Biological Phase Separations.

Authors:  Marta M Fay; Paul J Anderson
Journal:  J Mol Biol       Date:  2018-05-10       Impact factor: 5.469

7.  The Role of the O-GlcNAc Modification in Regulating Eukaryotic Gene Expression.

Authors:  Sandii Brimble; Edith E Wollaston-Hayden; Chin Fen Teo; Andrew C Morris; Lance Wells
Journal:  Curr Signal Transduct Ther       Date:  2010

Review 8.  Relationship of GW/P-bodies with stress granules.

Authors:  Georg Stoecklin; Nancy Kedersha
Journal:  Adv Exp Med Biol       Date:  2013       Impact factor: 2.622

9.  Cytoplasmic RNA Granules and Viral Infection.

Authors:  Wei-Chih Tsai; Richard E Lloyd
Journal:  Annu Rev Virol       Date:  2014-11       Impact factor: 10.431

10.  Composition of Rosenthal Fibers, the Protein Aggregate Hallmark of Alexander Disease.

Authors:  Michael R Heaven; Daniel Flint; Shan M Randall; Alexander A Sosunov; Landon Wilson; Stephen Barnes; James E Goldman; David C Muddiman; Michael Brenner
Journal:  J Proteome Res       Date:  2016-06-02       Impact factor: 4.466

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