Literature DB >> 18794420

Identification of biomarkers of adrenocortical carcinoma using genomewide gene expression profiling.

Gustavo G Fernandez-Ranvier1, Julie Weng, Ru-Fang Yeh, Elham Khanafshar, Insoo Suh, Christopher Barker, Quan Yang Duh, Orlo H Clark, Electron Kebebew.   

Abstract

HYPOTHESIS: The gene expression profiles of benign and malignant adrenocortical tumors are different.
DESIGN: Genomewide gene expression profiling and validation.
SETTING: Tertiary medical center. PATIENTS: Eighty-five patients with benign adrenocortical tumors (n = 74) and adrenocortical carcinoma (n = 11). INTERVENTION: Real-time quantitative reverse transcription-polymerase chain reaction (RT-PCR) in 89 adrenocortical tissue samples (11 malignant and 78 benign). The criteria for differentially expressed genes between benign and malignant adrenocortical tumors were a false discovery rate of less than 5% and an adjusted P < .01. Genes differentially expressed by 8-fold higher or lower were validated by RT-PCR. MAIN OUTCOME MEASURES: The diagnostic accuracy of differentially expressed genes as determined by the area under the receiver operating characteristic curve (AUC).
RESULTS: We found 37 genes differentially expressed by 8-fold higher or lower. Fifteen genes were downregulated and 22 were upregulated in adrenocortical carcinoma. Of the 37 genes, 29 differentially expressed by microarray correlated with the gene expression levels by quantitative RT-PCR (P < or = .01). Of the 37 genes validated by RT-PCR, 22 were significantly differentially expressed between benign and malignant adrenocortical tumors (P < .05). Five of these 22 genes had an AUC of 0.80 or greater (the AUC for IL13RA2 was 0.90; HTR2B, 0.87; CCNB2, 0.86; RARRES2, 0.86; and SLC16A9, 0.80), indicating high diagnostic accuracy for distinguishing benign from malignant adrenocortical tumors.
CONCLUSION: We identified 37 genes that are dysregulated in adrenocortical carcinoma, and several of the differentially expressed genes have excellent diagnostic accuracy for distinguishing benign from malignant adrenocortical tumors.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18794420     DOI: 10.1001/archsurg.143.9.841

Source DB:  PubMed          Journal:  Arch Surg        ISSN: 0004-0010


  45 in total

1.  Gene expression profiling using nanostring digital RNA counting to identify potential target antigens for melanoma immunotherapy.

Authors:  Rachel E Beard; Daniel Abate-Daga; Shannon F Rosati; Zhili Zheng; John R Wunderlich; Steven A Rosenberg; Richard A Morgan
Journal:  Clin Cancer Res       Date:  2013-09-10       Impact factor: 12.531

2.  Serum and salivary levels of chemerin and MMP-9 in oral squamous cell carcinoma and oral premalignant lesions.

Authors:  Noha A Ghallab; Olfat G Shaker
Journal:  Clin Oral Investig       Date:  2016-05-10       Impact factor: 3.573

3.  DNA methylation profiling identifies global methylation differences and markers of adrenocortical tumors.

Authors:  Nesrin S Rechache; Yonghong Wang; Holly S Stevenson; J Keith Killian; Daniel C Edelman; Maria Merino; Lisa Zhang; Naris Nilubol; Constantine A Stratakis; Paul S Meltzer; Electron Kebebew
Journal:  J Clin Endocrinol Metab       Date:  2012-04-03       Impact factor: 5.958

4.  Antitumoral effects of 9-cis retinoic acid in adrenocortical cancer.

Authors:  Diana Rita Szabó; Kornélia Baghy; Peter M Szabó; Adrienn Zsippai; István Marczell; Zoltán Nagy; Vivien Varga; Katalin Éder; Sára Tóth; Edit I Buzás; András Falus; Ilona Kovalszky; Attila Patócs; Károly Rácz; Peter Igaz
Journal:  Cell Mol Life Sci       Date:  2013-06-27       Impact factor: 9.261

5.  Proteolytic cleavage of chemerin protein is necessary for activation to the active form, Chem157S, which functions as a signaling molecule in glioblastoma.

Authors:  Yasuto Yamaguchi; Xiao-Yan Du; Lei Zhao; John Morser; Lawrence L K Leung
Journal:  J Biol Chem       Date:  2011-09-23       Impact factor: 5.157

6.  SNPs affecting serum metabolomic traits may regulate gene transcription and lipid accumulation in the liver.

Authors:  Snezana Mirkov; Jamie L Myers; Jacqueline Ramírez; Wanqing Liu
Journal:  Metabolism       Date:  2012-06-26       Impact factor: 8.694

Review 7.  Human adrenocortical carcinoma cell lines.

Authors:  Tao Wang; William E Rainey
Journal:  Mol Cell Endocrinol       Date:  2011-09-05       Impact factor: 4.102

Review 8.  Proteolytic regulatory mechanism of chemerin bioactivity.

Authors:  Xiao-Yan Du; Lawrence L K Leung
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2009-12       Impact factor: 3.848

9.  TOP2A is overexpressed and is a therapeutic target for adrenocortical carcinoma.

Authors:  Meenu Jain; Lisa Zhang; Mei He; Ya-Qin Zhang; Min Shen; Electron Kebebew
Journal:  Endocr Relat Cancer       Date:  2013-05-21       Impact factor: 5.678

10.  FDG PET/CT Scan and Functional Adrenal Tumors: A Pilot Study for Lateralization.

Authors:  Dhaval Patel; Sudheer Kumar Gara; Ryan J Ellis; Myriem Boufraqech; Naris Nilubol; Corina Millo; Constantine A Stratakis; Electron Kebebew
Journal:  World J Surg       Date:  2016-03       Impact factor: 3.352

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.