Literature DB >> 18791871

Thermal and non-thermal fluctuations in active polar gels.

A Basu1, J F Joanny, F Jülicher, J Prost.   

Abstract

We discuss general features of noise and fluctuations in active polar gels close to and away from equilibrium. We use the single-component hydrodynamic theory of active polar gels built by Kruse and coworkers to describe the cytoskeleton in cells. Close to equilibrium, we calculate the response function of the gel to external fields and introduce Langevin forces in the constitutive equations with correlation functions respecting the fluctuation-dissipation theorem. We then discuss the breakage of the fluctuation-dissipation theorem due to an external field such as the activity of the motors. Active gels away from equilibrium are considered at the scaling level. As an example of application of the theory, we calculate the density correlation function (the dynamic structure factor) of a compressible active polar gel and discuss possible instabilities.

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Year:  2008        PMID: 18791871     DOI: 10.1140/epje/i2008-10364-9

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  19 in total

1.  Self-organization and mechanical properties of active filament bundles.

Authors:  Karsten Kruse; Frank Jülicher
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-05-19

2.  Hydrodynamic fluctuations and instabilities in ordered suspensions of self-propelled particles.

Authors:  R Aditi Simha; Sriram Ramaswamy
Journal:  Phys Rev Lett       Date:  2002-07-15       Impact factor: 9.161

3.  Rheology of active-particle suspensions.

Authors:  Yashodhan Hatwalne; Sriram Ramaswamy; Madan Rao; R Aditi Simha
Journal:  Phys Rev Lett       Date:  2004-03-19       Impact factor: 9.161

4.  Asters, vortices, and rotating spirals in active gels of polar filaments.

Authors:  K Kruse; J F Joanny; F Jülicher; J Prost; K Sekimoto
Journal:  Phys Rev Lett       Date:  2004-02-20       Impact factor: 9.161

5.  Long-Range Order in a Two-Dimensional Dynamical XY Model: How Birds Fly Together.

Authors: 
Journal:  Phys Rev Lett       Date:  1995-12-04       Impact factor: 9.161

6.  Generic theory of active polar gels: a paradigm for cytoskeletal dynamics.

Authors:  K Kruse; J F Joanny; F Jülicher; J Prost; K Sekimoto
Journal:  Eur Phys J E Soft Matter       Date:  2005-01-31       Impact factor: 1.890

7.  Contractility and retrograde flow in lamellipodium motion.

Authors:  K Kruse; J F Joanny; F Jülicher; J Prost
Journal:  Phys Biol       Date:  2006-06-21       Impact factor: 2.583

8.  State-dependent diffusion: Thermodynamic consistency and its path integral formulation.

Authors:  A W C Lau; T C Lubensky
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-07-27

9.  Generic phase diagram of active polar films.

Authors:  R Voituriez; J F Joanny; J Prost
Journal:  Phys Rev Lett       Date:  2006-01-17       Impact factor: 9.161

10.  Fluctuating hydrodynamics and microrheology of a dilute suspension of swimming bacteria.

Authors:  A W C Lau; T C Lubensky
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-07-22
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  9 in total

Review 1.  Cell mechanics and the cytoskeleton.

Authors:  Daniel A Fletcher; R Dyche Mullins
Journal:  Nature       Date:  2010-01-28       Impact factor: 49.962

2.  Quantification of growth asymmetries in developing epithelia.

Authors:  T Bittig; O Wartlick; M González-Gaitán; F Jülicher
Journal:  Eur Phys J E Soft Matter       Date:  2009-09-18       Impact factor: 1.890

3.  Active gels as a description of the actin-myosin cytoskeleton.

Authors:  Jean-François Joanny; Jacques Prost
Journal:  HFSP J       Date:  2009-01-06

4.  Fluctuations and symmetries in two-dimensional active gels.

Authors:  N Sarkar; A Basu
Journal:  Eur Phys J E Soft Matter       Date:  2011-04-29       Impact factor: 1.890

5.  A random first-order transition theory for an active glass.

Authors:  Saroj Kumar Nandi; Rituparno Mandal; Pranab Jyoti Bhuyan; Chandan Dasgupta; Madan Rao; Nir S Gov
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-09       Impact factor: 11.205

6.  Active emulsions in living cell membranes driven by contractile stresses and transbilayer coupling.

Authors:  Suvrajit Saha; Amit Das; Chandrima Patra; Anupama Ambika Anilkumar; Parijat Sil; Satyajit Mayor; Madan Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-22       Impact factor: 12.779

7.  Activity induces traveling waves, vortices and spatiotemporal chaos in a model actomyosin layer.

Authors:  Rajesh Ramaswamy; Frank Jülicher
Journal:  Sci Rep       Date:  2016-02-15       Impact factor: 4.379

Review 8.  Stochastic Hydrodynamics of Complex Fluids: Discretisation and Entropy Production.

Authors:  Michael E Cates; Étienne Fodor; Tomer Markovich; Cesare Nardini; Elsen Tjhung
Journal:  Entropy (Basel)       Date:  2022-02-09       Impact factor: 2.524

9.  Dynamics of passive and active particles in the cell nucleus.

Authors:  Feroz M Hameed; Madan Rao; G V Shivashankar
Journal:  PLoS One       Date:  2012-10-15       Impact factor: 3.240

  9 in total

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