Literature DB >> 18787764

Mechanosensitive channels: insights from continuum-based simulations.

Yuye Tang1, Jejoong Yoo, Arun Yethiraj, Qiang Cui, Xi Chen.   

Abstract

Mechanotransduction plays an important role in regulating cell functions and it is an active topic of research in biophysics. Despite recent advances in experimental and numerical techniques, the intrinsic multiscale nature imposes tremendous challenges for revealing the working mechanisms of mechanosensitive channels. Recently, a continuum-mechanics-based hierarchical modeling and simulation framework has been established and applied to study the mechanical responses and gating behaviors of a prototypical mechanosensitive channel, the mechanosensitive channel of large conductance (MscL) in bacteria Escherichia coli (E. coli), from which several putative gating mechanisms have been tested and new insights are deduced. This article reviews these latest findings using the continuum mechanics framework and suggests possible improvements for future simulation studies. This computationally efficient and versatile continuum-mechanics-based protocol is poised to make contributions to the study of a variety of mechanobiology problems.

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Year:  2008        PMID: 18787764      PMCID: PMC2651832          DOI: 10.1007/s12013-008-9024-5

Source DB:  PubMed          Journal:  Cell Biochem Biophys        ISSN: 1085-9195            Impact factor:   2.194


  87 in total

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Journal:  Nat Struct Biol       Date:  2002-09

2.  Gating-by-tilt of mechanically sensitive membrane channels.

Authors:  Matthew S Turner; Pierre Sens
Journal:  Phys Rev Lett       Date:  2004-09-10       Impact factor: 9.161

Review 3.  Trp ion channels and temperature sensation.

Authors:  Ajay Dhaka; Veena Viswanath; Ardem Patapoutian
Journal:  Annu Rev Neurosci       Date:  2006       Impact factor: 12.449

Review 4.  Mechanotransduction and auditory transduction in Drosophila.

Authors:  Maurice J Kernan
Journal:  Pflugers Arch       Date:  2007-04-14       Impact factor: 3.657

5.  Mixed atomistic and coarse-grained molecular dynamics: simulation of a membrane-bound ion channel.

Authors:  Qiang Shi; Sergei Izvekov; Gregory A Voth
Journal:  J Phys Chem B       Date:  2006-08-10       Impact factor: 2.991

6.  Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches.

Authors:  O P Hamill; A Marty; E Neher; B Sakmann; F J Sigworth
Journal:  Pflugers Arch       Date:  1981-08       Impact factor: 3.657

7.  Pivotal role of the glycine-rich TM3 helix in gating the MscS mechanosensitive channel.

Authors:  Michelle D Edwards; Yuezhou Li; Sanguk Kim; Samantha Miller; Wendy Bartlett; Susan Black; Sally Dennison; Irene Iscla; Paul Blount; James U Bowie; Ian R Booth
Journal:  Nat Struct Mol Biol       Date:  2005-01-23       Impact factor: 15.369

8.  Energetic and spatial parameters for gating of the bacterial large conductance mechanosensitive channel, MscL.

Authors:  S I Sukharev; W J Sigurdson; C Kung; F Sachs
Journal:  J Gen Physiol       Date:  1999-04       Impact factor: 4.086

9.  Physical principles underlying the transduction of bilayer deformation forces during mechanosensitive channel gating.

Authors:  Eduardo Perozo; Anna Kloda; D Marien Cortes; Boris Martinac
Journal:  Nat Struct Biol       Date:  2002-09

10.  Understanding nature's design for a nanosyringe.

Authors:  Carlos F Lopez; Steve O Nielsen; Preston B Moore; Michael L Klein
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-12       Impact factor: 11.205

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  5 in total

1.  A computational framework for mechanical response of macromolecules: application to the salt concentration dependence of DNA bendability.

Authors:  Liang Ma; Arun Yethiraj; Xi Chen; Qiang Cui
Journal:  Biophys J       Date:  2009-05-06       Impact factor: 4.033

Review 2.  Systematic multiscale simulation of membrane protein systems.

Authors:  Gary S Ayton; Gregory A Voth
Journal:  Curr Opin Struct Biol       Date:  2009-04-09       Impact factor: 6.809

3.  The role of MscL amphipathic N terminus indicates a blueprint for bilayer-mediated gating of mechanosensitive channels.

Authors:  Navid Bavi; D Marien Cortes; Charles D Cox; Paul R Rohde; Weihong Liu; Joachim W Deitmer; Omid Bavi; Pavel Strop; Adam P Hill; Douglas Rees; Ben Corry; Eduardo Perozo; Boris Martinac
Journal:  Nat Commun       Date:  2016-06-22       Impact factor: 14.919

4.  Coarse-Grained Models for Protein-Cell Membrane Interactions.

Authors:  Ryan Bradley; Ravi Radhakrishnan
Journal:  Polymers (Basel)       Date:  2013       Impact factor: 4.329

5.  The Combined Effect of Hydrophobic Mismatch and Bilayer Local Bending on the Regulation of Mechanosensitive Ion Channels.

Authors:  Omid Bavi; Manouchehr Vossoughi; Reza Naghdabadi; Yousef Jamali
Journal:  PLoS One       Date:  2016-03-09       Impact factor: 3.240

  5 in total

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