Literature DB >> 18784943

Identifying modifier genes of monogenic disease: strategies and difficulties.

Emmanuelle Génin1, Josué Feingold, Françoise Clerget-Darpoux.   

Abstract

Substantial clinical variability is observed in many Mendelian diseases, so that patients with the same mutation may develop a very severe form of disease, a mild form or show no symptoms at all. Among the factors that may explain these differences in disease expression are modifier genes. In this paper, we review the different strategies that can be used to identify modifier genes and explain their advantages and limitations. We focus mainly on the statistical aspects but illustrate our points with a variety of examples from the literature.

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Year:  2008        PMID: 18784943      PMCID: PMC2911473          DOI: 10.1007/s00439-008-0560-2

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  61 in total

1.  A general test of association for quantitative traits in nuclear families.

Authors:  G R Abecasis; L R Cardon; W O Cookson
Journal:  Am J Hum Genet       Date:  2000-01       Impact factor: 11.025

2.  Ordered subset analysis in genetic linkage mapping of complex traits.

Authors:  Elizabeth R Hauser; Richard M Watanabe; William L Duren; Meredyth P Bass; Carl D Langefeld; Michael Boehnke
Journal:  Genet Epidemiol       Date:  2004-07       Impact factor: 2.135

3.  History dependent effects on phenotypic expression of a newly emerged gene.

Authors:  Takao Suzuki; Akiko Kashiwagi; Kotaro Mori; Itaru Urabe; Tetsuya Yomo
Journal:  Biosystems       Date:  2004-11       Impact factor: 1.973

4.  Principal components analysis corrects for stratification in genome-wide association studies.

Authors:  Alkes L Price; Nick J Patterson; Robert M Plenge; Michael E Weinblatt; Nancy A Shadick; David Reich
Journal:  Nat Genet       Date:  2006-07-23       Impact factor: 38.330

5.  Tag SNP selection for candidate gene association studies using HapMap and gene resequencing data.

Authors:  Zongli Xu; Norman L Kaplan; Jack A Taylor
Journal:  Eur J Hum Genet       Date:  2007-06-13       Impact factor: 4.246

6.  Characteristics and prognostic implications of myosin missense mutations in familial hypertrophic cardiomyopathy.

Authors:  H Watkins; A Rosenzweig; D S Hwang; T Levi; W McKenna; C E Seidman; J G Seidman
Journal:  N Engl J Med       Date:  1992-04-23       Impact factor: 91.245

7.  A simple and improved correction for population stratification in case-control studies.

Authors:  Michael P Epstein; Andrew S Allen; Glen A Satten
Journal:  Am J Hum Genet       Date:  2007-03-29       Impact factor: 11.025

8.  Variation of risks of breast and ovarian cancer associated with different germline mutations of the BRCA2 gene.

Authors:  S A Gayther; J Mangion; P Russell; S Seal; R Barfoot; B A Ponder; M R Stratton; D Easton
Journal:  Nat Genet       Date:  1997-01       Impact factor: 38.330

9.  Ischaemic disease in men and women with familial hypercholesterolaemia and xanthomatosis. A comparative study of genetic and environmental factors in 274 heterozygous cases.

Authors:  V Beaumont; B Jacotot; J L Beaumont
Journal:  Atherosclerosis       Date:  1976-09       Impact factor: 5.162

10.  Americo Negrette (1924 to 2003): diagnosing Huntington disease in Venezuela.

Authors:  Michael S Okun; Nia Thommi
Journal:  Neurology       Date:  2004-07-27       Impact factor: 9.910

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  51 in total

1.  Modifier locus of the skeletal muscle involvement in Emery-Dreifuss muscular dystrophy.

Authors:  B Granger; L Gueneau; V Drouin-Garraud; V Pedergnana; F Gagnon; R Ben Yaou; S Tezenas du Montcel; G Bonne
Journal:  Hum Genet       Date:  2010-11-10       Impact factor: 4.132

Review 2.  A Next Generation Multiscale View of Inborn Errors of Metabolism.

Authors:  Carmen A Argmann; Sander M Houten; Jun Zhu; Eric E Schadt
Journal:  Cell Metab       Date:  2015-12-17       Impact factor: 27.287

3.  A SNP in the HTT promoter alters NF-κB binding and is a bidirectional genetic modifier of Huntington disease.

Authors:  Kristina Bečanović; Anne Nørremølle; Scott J Neal; Chris Kay; Jennifer A Collins; David Arenillas; Tobias Lilja; Giulia Gaudenzi; Shiana Manoharan; Crystal N Doty; Jessalyn Beck; Nayana Lahiri; Elodie Portales-Casamar; Simon C Warby; Colúm Connolly; Rebecca A G De Souza; Sarah J Tabrizi; Ola Hermanson; Douglas R Langbehn; Michael R Hayden; Wyeth W Wasserman; Blair R Leavitt
Journal:  Nat Neurosci       Date:  2015-05-04       Impact factor: 24.884

4.  Genetic modifier loci of mouse Mfrp(rd6) identified by quantitative trait locus analysis.

Authors:  Jungyeon Won; Jeremy R Charette; Vivek M Philip; Timothy M Stearns; Weidong Zhang; Jürgen K Naggert; Mark P Krebs; Patsy M Nishina
Journal:  Exp Eye Res       Date:  2013-11-04       Impact factor: 3.467

Review 5.  Genetics and epigenetic factors of Wilson disease.

Authors:  Valentina Medici; Janine M LaSalle
Journal:  Ann Transl Med       Date:  2019-04

Review 6.  Genetic modifiers and oligogenic inheritance.

Authors:  Maria Kousi; Nicholas Katsanis
Journal:  Cold Spring Harb Perspect Med       Date:  2015-06-01       Impact factor: 6.915

Review 7.  Advances in the discovery of genetic risk factors for complex forms of neurodegenerative disorders: contemporary approaches, success, challenges and prospects.

Authors:  Sumeet Kumar; Navneesh Yadav; Sanjay Pandey; B K Thelma
Journal:  J Genet       Date:  2018-07       Impact factor: 1.166

Review 8.  Exploring genetic modifiers of Gaucher disease: The next horizon.

Authors:  Brad A Davidson; Shahzeb Hassan; Eric Joshua Garcia; Nahid Tayebi; Ellen Sidransky
Journal:  Hum Mutat       Date:  2018-09-11       Impact factor: 4.878

9.  Compensatory epistasis explored by molecular dynamics simulations.

Authors:  Sérgio F Sousa; Luísa Azevedo; Catarina Serrano; Carla S S Teixeira; David N Cooper; João Carneiro; Mónica Lopes-Marques; Peter D Stenson; António Amorim; Maria J Prata
Journal:  Hum Genet       Date:  2021-06-26       Impact factor: 4.132

10.  Mutations in CLDN14 are associated with different hearing thresholds.

Authors:  Rasheeda Bashir; Amara Fatima; Sadaf Naz
Journal:  J Hum Genet       Date:  2010-09-02       Impact factor: 3.172

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