| Literature DB >> 18778489 |
Dongju Su1, Ximei Zhang, Hong Sui, Fuzhen Lü, Lianhong Jin, Jing Zhang.
Abstract
BACKGROUND: Rhinitis and asthma are very common diseases involving genetic and environmental factors. Most patients with asthma also have rhinitis, which suggests the concept of 'one airway, one disease.' A disintegrin and metalloproteinase 33 (ADAM33) is the first asthma-susceptible gene to be discovered by positional cloning. To evaluate the potential influence of ADAM33 gene polymorphisms on allergic rhinitis (AR) and allergic asthma (AS), a case-control study was conducted on the Han population of northeast China.Entities:
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Year: 2008 PMID: 18778489 PMCID: PMC2553063 DOI: 10.1186/1471-2350-9-82
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Description of study population
| Characteristic | AR | AS | CTR |
| Number of patients | 128 | 181 | 151 |
| Age (years) | 39.27 ± 13.53 | 36.69 ± 11.53 | 37.18 ± 10.60 |
| Gender (Female) | 44(34.38%) | 67(37.02%) | 54(35.76%) |
| FEV1 (%) | 100.95 ± 5.36 | 73.38 ± 10.66 | 102.84 ± 3.11 |
Primers and PCR programs for ADAM33 PCR-RFLP genotyping
| Reference SNP ID | Gene/SNP primer | Sequence | PCR program |
| rs2787094 | ADAM33 V4C/G F | 5'-ACACACAGAATGGGGGAGAG-3' | 94°C 5 min; 35 cycles, 94°C 30 s, |
| ADAM33 V4C/G R | 5'-CCAGAAGCAAAGGTCACACA-3' | 53°C 30 s, 72°C 30 s; 72°C 5 min | |
| rs2280089 | ADAM33T+1A/G F | 5'-CTGAGCCCAGAAACCTGATT-3' | 94°C 5 min; 35 cycles, 94°C 30 s, |
| ADAM33T+1A/G R | 5'-AGAAGGGAAGGGCTCATGC-3' | 54°C 30 s, 72°C 30 s; 72°C 5 min | |
| rs2280090 | ADAM33 T2A/G F | 5'-TTCTCAGGGTCTGGGAGAAA-3' | 94°C 5 min; 35 cycles, 94°C 30 s, |
| ADAM33 T2A/G R | 5'-GCCAACCTCCTGGACTCTTA-3' | 52°C 30 s, 72°C 30 s; 72°C 5 min | |
| rs2280091 | ADAM33 T1A/G F | 5'-ACTCAAGGTGACTGGGTGCT-3' | 94°C 5 min; 35 cycles, 94°C 30 s, |
| ADAM33 T1A/G R | 5'-GAGGGCATGAGGCTCACTTG-3' | 54°C 30 s, 72°C 30 s; 72°C 5 min | |
| rs3918396 | ADAM33 S1A/G F | 5'-TGTGCAGGCTGAAAGTATGC-3' | 94°C 5 min; 35 cycles, 94°C 30 s, |
| ADAM33 S1A/G R | 5'-AGAGCTCTGAGGAGGGGAAC-3' | 50°C 30 s, 72°C 30 s; 72°C 5 min | |
| rs612709 | ADAM33 Q-1A/G F | 5'-GGATTCAAACGGCAAGGAG-3' | 94°C 5 min; 35 cycles, 94°C 30 s, |
| ADAM33 Q-1A/G R | 5'-GTTCACCTAGATGGCCAGGA-3' | 60°C 30 s, 72°C 30 s; 72°C 5 min |
Restriction enzymes and length of digested fragments
| V4C/G | T+1A/G | T2A/G | T1A/G | S1A/G | Q-1A/G | |
| Enzyme | PstI | HpyAV | HpyCH4III | NcoI | HinfI | BtsCI |
| Length of digested | G: 168+206 | A: 284+28 | A: 198+112 | A: 140+260 | G: 132+172 | A: 20+138 |
| fragments (bp) | C: 374 | G: 312 | G: 310 | G: 400 | A: 304 | G: 158 |
Genotype frequency distribution and association study in ADAM33 between AR and CTR
| Genotype | Frequency, no.(%) | x2 P value | Odds ratio | ||
| AR(n = 128) | CTR(n = 151) | (95% CI) | |||
| rs2787094 | CC | 46(35.94) | 113(74.84) | <0.0001 | 0.19(0.11–0.32) |
| CG | 60(46.88) | 32(21.19) | <0.0001 | 3.28(1.95–5.53) | |
| GG | 22(17.18) | 6(3.97) | 0.0003 | 5.02(1.97–12.80) | |
| rs2290089 | AA | 4(3.13) | 0 | 0.0432 | |
| AG | 51(39.84) | 41(27.15) | 0.0246 | 1.78(1.07–2.94) | |
| GG | 73(57.03) | 110(72.85) | 0.0056 | 0.49(0.30–0.82) | |
| rs2280090 | AA | 0 | 0 | ||
| AG | 24(18.75) | 12(7.95) | 0.0073 | 2.67(1.28–5.59) | |
| GG | 104(81.25) | 139(92.05) | 0.0073 | 0.37(0.18–0.78) | |
| rs2280091 | AA | 56(43.75) | 117(77.48) | <0.0001 | 0.23(0.13–0.38) |
| AG | 55(42.97) | 29(19.21) | <0.0001 | 3.17(1.86–5.41) | |
| GG | 17(13.28) | 5(3.31) | 0.0021 | 4.47(1.60–12.49) | |
| rs3918396 | AA | 100(78.12) | 110(72.85) | 0.3086 | |
| AG | 28(21.88) | 41(27.15) | 0.3086 | ||
| GG | 0 | 0 | |||
| rs612709 | AA | 0 | 0 | ||
| AG | 16(12.5) | 11(7.28) | 0.142 | ||
| GG | 112(87.5) | 140(92.72) | 0.142 | ||
Genotype frequency distribution and association study in ADAM33 between AS and CTR
| Genotype | Frequency, no.(%) | x2 P value | Odds ratio | ||
| AS(n = 181) | CTR(n = 151) | (95% CI) | |||
| rs2787094 | CC | 49(27.07) | 113(74.84) | <0.0001 | 0.12(0.08–0.20) |
| CG | 78(43.09) | 32(21.19) | <0.0001 | 2.82(1.73–4.59) | |
| GG | 54(29.84) | 6(3.97) | <0.0001 | 10.28(4.28–24.69) | |
| rs2290089 | AA | 0 | 0 | ||
| AG | 37(20.44) | 41(27.15) | 0.151 | ||
| GG | 144(79.56) | 110(72.85) | 0.151 | ||
| rs2280090 | AA | 4(2.21) | 0 | 0.1289 | |
| AG | 49(27.07) | 12(7.95) | <0.0001 | 4.30(2.19–8.44) | |
| GG | 128(70.72) | 139(92.05) | <0.0001 | 0.21(0.11–0.41) | |
| rs2280091 | AA | 63(34.81) | 117(77.48) | <0.0001 | 0.16(0.10–0.25) |
| AG | 78(43.09) | 29(19.21) | <0.0001 | 3.19(1.93–5.26) | |
| GG | 40(22.10) | 5(3.31) | <0.0001 | 8.28(3.18–21.59) | |
| rs3918396 | AA | 140(77.35) | 110(72.85) | 0.3437 | |
| AG | 41(22.65) | 41(27.15) | 0.3437 | ||
| GG | 0 | 0 | |||
| rs612709 | AA | 0 | 0 | ||
| AG | 44(24.31) | 11(7.28) | <0.0001 | 4.09(2.03–8.24) | |
| GG | 137(75.69) | 140(92.72) | <0.0001 | 0.24(0.12–0.49) | |
Allele frequency distribution and association study in ADAM33
| Name | SNP | Minor allele frequency | P-value | Permutation p-value | Odds ratio (95% CI) | |||||
| AR (n = 128) | AS (n = 181) | CTR (n = 151) | AR vs CTR | AS vs CTR | AR vs CTR | AS vs CTR | AR vs CTR | AS vs CTR | ||
| Rs2787094 | G/C | 0.406 | 0.514 | 0.146 | <0.0001 | <0.0001 | <0.0001 | <0.0001 | 0.25(0.17–0.37) | 0.16(0.11–0.24) |
| rs2280089 | A/G | 0.231 | 0.102 | 0.136 | 0.0037 | 0.1812 | 0.0279 | 1.91(1.23–2.96) | ||
| rs2280090 | A/G | 0.094 | 0.158 | 0.04 | 0.0097 | <0.0001 | <0.0001 | 4.52(2.37–8.59) | ||
| rs2280091 | G/A | 0.348 | 0.437 | 0.129 | <0.0001 | <0.0001 | <0.0001 | <0.0001 | 0.28(0.18–0.42) | 0.19(0.13–0.28) |
| rs3918396 | G/A | 0.109 | 0.113 | 0.136 | 0.3454 | 0.3802 | ||||
| rs612709 | A/G | 0.063 | 0.121 | 0.036 | 0.1526 | <0.0001 | 0.0016 | 3.66(1.86–7.22) | ||