Literature DB >> 18771743

Quantifying neuronal size: summing up trees and splitting the branch difference.

Kerry M Brown1, Todd A Gillette, Giorgio A Ascoli.   

Abstract

Neurons vary greatly in size, shape, and complexity depending on their underlying function. Overall size of neuronal trees affects connectivity, area of influence, and other biophysical properties. Relative distributions of neuronal extent, such as the difference between subtrees at branch points, are also critically related to function and activity. This review covers neuromorphological research that analyzes shape and size to elucidate their functional role for different neuron types. We also introduce a novel morphometric, "caulescence", capturing the extent to which trees exhibit a main path. Neuronal tree types differ vastly in caulescence, suggesting potential neurocomputational correlates of this property.

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Mesh:

Year:  2008        PMID: 18771743      PMCID: PMC2643249          DOI: 10.1016/j.semcdb.2008.08.005

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  69 in total

1.  Functional trade-offs in white matter axonal scaling.

Authors:  Samuel S-H Wang; Jennifer R Shultz; Mark J Burish; Kimberly H Harrison; Patrick R Hof; Lex C Towns; Matthew W Wagers; Krysta D Wyatt
Journal:  J Neurosci       Date:  2008-04-09       Impact factor: 6.167

2.  L-Measure: a web-accessible tool for the analysis, comparison and search of digital reconstructions of neuronal morphologies.

Authors:  Ruggero Scorcioni; Sridevi Polavaram; Giorgio A Ascoli
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

3.  Compartmentalized dendritic plasticity and input feature storage in neurons.

Authors:  Attila Losonczy; Judit K Makara; Jeffrey C Magee
Journal:  Nature       Date:  2008-03-27       Impact factor: 49.962

4.  The dynamics of dendritic structure in developing hippocampal slices.

Authors:  M E Dailey; S J Smith
Journal:  J Neurosci       Date:  1996-05-01       Impact factor: 6.167

5.  Development of olfactory glomeruli: temporal and spatial interactions between olfactory receptor axons and mitral cells in opossums and rats.

Authors:  D Malun; P C Brunjes
Journal:  J Comp Neurol       Date:  1996-04-22       Impact factor: 3.215

6.  Determination of fractal dimension of physiologically characterized neurons in two and three dimensions.

Authors:  F Caserta; W D Eldred; E Fernandez; R E Hausman; L R Stanford; S V Bulderev; S Schwarzer; H E Stanley
Journal:  J Neurosci Methods       Date:  1995-02       Impact factor: 2.390

7.  Mathematical modeling of dendritic growth in vitro.

Authors:  E Uemura; A Carriquiry; W Kliemann; J Goodwin
Journal:  Brain Res       Date:  1995-02-13       Impact factor: 3.252

Review 8.  Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex.

Authors:  Giorgio A Ascoli; Lidia Alonso-Nanclares; Stewart A Anderson; German Barrionuevo; Ruth Benavides-Piccione; Andreas Burkhalter; György Buzsáki; Bruno Cauli; Javier Defelipe; Alfonso Fairén; Dirk Feldmeyer; Gord Fishell; Yves Fregnac; Tamas F Freund; Daniel Gardner; Esther P Gardner; Jesse H Goldberg; Moritz Helmstaedter; Shaul Hestrin; Fuyuki Karube; Zoltán F Kisvárday; Bertrand Lambolez; David A Lewis; Oscar Marin; Henry Markram; Alberto Muñoz; Adam Packer; Carl C H Petersen; Kathleen S Rockland; Jean Rossier; Bernardo Rudy; Peter Somogyi; Jochen F Staiger; Gabor Tamas; Alex M Thomson; Maria Toledo-Rodriguez; Yun Wang; David C West; Rafael Yuste
Journal:  Nat Rev Neurosci       Date:  2008-07       Impact factor: 34.870

9.  Chronic psychosocial stress causes apical dendritic atrophy of hippocampal CA3 pyramidal neurons in subordinate tree shrews.

Authors:  A M Magariños; B S McEwen; G Flügge; E Fuchs
Journal:  J Neurosci       Date:  1996-05-15       Impact factor: 6.167

10.  A comparative computer simulation of dendritic morphology.

Authors:  Duncan E Donohue; Giorgio A Ascoli
Journal:  PLoS Comput Biol       Date:  2008-06-06       Impact factor: 4.475

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  26 in total

1.  The DIADEM metric: comparing multiple reconstructions of the same neuron.

Authors:  Todd A Gillette; Kerry M Brown; Giorgio A Ascoli
Journal:  Neuroinformatics       Date:  2011-09

2.  Models and simulation of 3D neuronal dendritic trees using Bayesian networks.

Authors:  Pedro L López-Cruz; Concha Bielza; Pedro Larrañaga; Ruth Benavides-Piccione; Javier DeFelipe
Journal:  Neuroinformatics       Date:  2011-12

3.  Semi-automated Sholl analysis for quantifying changes in growth and differentiation of neurons and glia.

Authors:  John C Gensel; David L Schonberg; Jessica K Alexander; Dana M McTigue; Phillip G Popovich
Journal:  J Neurosci Methods       Date:  2010-05-11       Impact factor: 2.390

4.  Morphometry of hilar ectopic granule cells in the rat.

Authors:  Joseph P Pierce; Daniel P McCloskey; Helen E Scharfman
Journal:  J Comp Neurol       Date:  2011-04-15       Impact factor: 3.215

5.  Effects of location and extent of spine clustering on synaptic integration in striatal medium spiny neurons-a computational study.

Authors:  Mrunal Rane; Rohit Manchanda
Journal:  Med Biol Eng Comput       Date:  2017-12-06       Impact factor: 2.602

Review 6.  Automated reconstruction of neuronal morphology: an overview.

Authors:  Duncan E Donohue; Giorgio A Ascoli
Journal:  Brain Res Rev       Date:  2010-11-27

7.  Measuring neuronal branching patterns using model-based approach.

Authors:  Artur Luczak
Journal:  Front Comput Neurosci       Date:  2010-10-20       Impact factor: 2.380

8.  Digital morphometry of rat cerebellar climbing fibers reveals distinct branch and bouton types.

Authors:  Kerry M Brown; Izumi Sugihara; Yoshikazu Shinoda; Giorgio A Ascoli
Journal:  J Neurosci       Date:  2012-10-17       Impact factor: 6.167

9.  Systems pharmacology of the nerve growth factor pathway: use of a systems biology model for the identification of key drug targets using sensitivity analysis and the integration of physiology and pharmacology.

Authors:  Neil Benson; Tomomi Matsuura; Sergey Smirnov; Oleg Demin; Hannah M Jones; Pinky Dua; Piet H van der Graaf
Journal:  Interface Focus       Date:  2013-04-06       Impact factor: 3.906

10.  Digital reconstruction and morphometric analysis of human brain arterial vasculature from magnetic resonance angiography.

Authors:  Susan N Wright; Peter Kochunov; Fernando Mut; Maurizio Bergamino; Kerry M Brown; John C Mazziotta; Arthur W Toga; Juan R Cebral; Giorgio A Ascoli
Journal:  Neuroimage       Date:  2013-05-28       Impact factor: 6.556

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