Literature DB >> 18771285

Global conformational dynamics in ras.

Casey O'Connor1, Evgenii L Kovrigin.   

Abstract

Ras and its homologues are central to regulation of a multitude of cellular processes. Ras in complex with GTP binds and activates its downstream signaling partners. (31)P NMR studies indicated that the Ras-GTP conformation is heterogeneous on a millisecond time scale, but details of its conformational dynamics remain unknown. Here we present evidence that the conformational exchange process in human H-Ras complexed with GTP mimic GppNHp is global, encompassing most of the GTPase catalytic domain. The correlated character of conformational dynamics in Ras opens opportunities for understanding allosteric effects in Ras function.

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Year:  2008        PMID: 18771285     DOI: 10.1021/bi801076c

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  27 in total

1.  Solution structure of the state 1 conformer of GTP-bound H-Ras protein and distinct dynamic properties between the state 1 and state 2 conformers.

Authors:  Mitsugu Araki; Fumi Shima; Yoko Yoshikawa; Shin Muraoka; Yuichi Ijiri; Yuka Nagahara; Tomoya Shirono; Tohru Kataoka; Atsuo Tamura
Journal:  J Biol Chem       Date:  2011-09-19       Impact factor: 5.157

2.  The Ras G Domain Lacks the Intrinsic Propensity to Form Dimers.

Authors:  Elizaveta A Kovrigina; Azamat R Galiakhmetov; Evgenii L Kovrigin
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

Review 3.  Drugging Ras GTPase: a comprehensive mechanistic and signaling structural view.

Authors:  Shaoyong Lu; Hyunbum Jang; Shuo Gu; Jian Zhang; Ruth Nussinov
Journal:  Chem Soc Rev       Date:  2016-07-11       Impact factor: 54.564

4.  The small GTPases K-Ras, N-Ras, and H-Ras have distinct biochemical properties determined by allosteric effects.

Authors:  Christian W Johnson; Derion Reid; Jillian A Parker; Shores Salter; Ryan Knihtila; Petr Kuzmic; Carla Mattos
Journal:  J Biol Chem       Date:  2017-06-19       Impact factor: 5.157

5.  Critical roles of interactions among switch I-preceding residues and between switch II and its neighboring alpha-helix in conformational dynamics of the GTP-bound Ras family small GTPases.

Authors:  Kousuke Matsumoto; Fumi Shima; Shin Muraoka; Mitsugu Araki; Lizhi Hu; Yuichi Ijiri; Rina Hirai; Jingling Liao; Takashi Yoshioka; Takashi Kumasaka; Masaki Yamamoto; Atsuo Tamura; Tohru Kataoka
Journal:  J Biol Chem       Date:  2011-03-09       Impact factor: 5.157

6.  Allosteric modulation of Ras positions Q61 for a direct role in catalysis.

Authors:  Greg Buhrman; Genevieve Holzapfel; Susan Fetics; Carla Mattos
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-01       Impact factor: 11.205

7.  Accessing protein conformational ensembles using room-temperature X-ray crystallography.

Authors:  James S Fraser; Henry van den Bedem; Avi J Samelson; P Therese Lang; James M Holton; Nathaniel Echols; Tom Alber
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-14       Impact factor: 11.205

Review 8.  Biology, pathology, and therapeutic targeting of RAS.

Authors:  J Matthew Rhett; Imran Khan; John P O'Bryan
Journal:  Adv Cancer Res       Date:  2020-07-09       Impact factor: 6.242

9.  Analysis of binding site hot spots on the surface of Ras GTPase.

Authors:  Greg Buhrman; Casey O'Connor; Brandon Zerbe; Bradley M Kearney; Raeanne Napoleon; Elizaveta A Kovrigina; Sandor Vajda; Dima Kozakov; Evgenii L Kovrigin; Carla Mattos
Journal:  J Mol Biol       Date:  2011-09-16       Impact factor: 5.469

10.  Inhibition of RAS: proven and potential vulnerabilities.

Authors:  Mariyam Zuberi; Imran Khan; John P O'Bryan
Journal:  Biochem Soc Trans       Date:  2020-10-30       Impact factor: 5.407

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