Literature DB >> 18764775

Approximately sufficient statistics and bayesian computation.

Paul Joyce1, Paul Marjoram.   

Abstract

The analysis of high-dimensional data sets is often forced to rely upon well-chosen summary statistics. A systematic approach to choosing such statistics, which is based upon a sound theoretical framework, is currently lacking. In this paper we develop a sequential scheme for scoring statistics according to whether their inclusion in the analysis will substantially improve the quality of inference. Our method can be applied to high-dimensional data sets for which exact likelihood equations are not possible. We illustrate the potential of our approach with a series of examples drawn from genetics. In summary, in a context in which well-chosen summary statistics are of high importance, we attempt to put the 'well' into 'chosen.'

Mesh:

Year:  2008        PMID: 18764775     DOI: 10.2202/1544-6115.1389

Source DB:  PubMed          Journal:  Stat Appl Genet Mol Biol        ISSN: 1544-6115


  32 in total

1.  Likelihood-free inference of population structure and local adaptation in a Bayesian hierarchical model.

Authors:  Eric Bazin; Kevin J Dawson; Mark A Beaumont
Journal:  Genetics       Date:  2010-04-09       Impact factor: 4.562

2.  Distinguishing positive selection from neutral evolution: boosting the performance of summary statistics.

Authors:  Kao Lin; Haipeng Li; Christian Schlötterer; Andreas Futschik
Journal:  Genetics       Date:  2010-11-01       Impact factor: 4.562

3.  Efficient approximate Bayesian computation coupled with Markov chain Monte Carlo without likelihood.

Authors:  Daniel Wegmann; Christoph Leuenberger; Laurent Excoffier
Journal:  Genetics       Date:  2009-06-08       Impact factor: 4.562

4.  Approximate bayesian computation without summary statistics: the case of admixture.

Authors:  Vitor C Sousa; Marielle Fritz; Mark A Beaumont; Lounès Chikhi
Journal:  Genetics       Date:  2009-02-02       Impact factor: 4.562

Review 5.  Post-GWAS: where next? More samples, more SNPs or more biology?

Authors:  P Marjoram; A Zubair; S V Nuzhdin
Journal:  Heredity (Edinb)       Date:  2013-06-12       Impact factor: 3.821

6.  Lack of confidence in approximate Bayesian computation model choice.

Authors:  Christian P Robert; Jean-Marie Cornuet; Jean-Michel Marin; Natesh S Pillai
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-29       Impact factor: 11.205

7.  AABC: approximate approximate Bayesian computation for inference in population-genetic models.

Authors:  Erkan O Buzbas; Noah A Rosenberg
Journal:  Theor Popul Biol       Date:  2014-09-26       Impact factor: 1.570

8.  From evidence to inference: probing the evolution of protein interaction networks.

Authors:  Oliver Ratmann; Carsten Wiuf; John W Pinney
Journal:  HFSP J       Date:  2009-10-19

9.  Choice of summary statistic weights in approximate Bayesian computation.

Authors:  Hsuan Jung; Paul Marjoram
Journal:  Stat Appl Genet Mol Biol       Date:  2011-09-27

10.  Automating approximate Bayesian computation by local linear regression.

Authors:  Kevin R Thornton
Journal:  BMC Genet       Date:  2009-07-07       Impact factor: 2.797

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