Literature DB >> 18763976

Solitary waves in twist-opening models of DNA dynamics.

Giuseppe Gaeta1, Laura Venier.   

Abstract

We analyze traveling solitary wave solutions in the Barbi-Cocco-Peyrard twist-opening model of nonlinear DNA dynamics. We identify conditions, involving an interplay of physical parameters and asymptotic behavior, for such solutions to exist, and provide first-order ordinary differential equations whose solutions give the required solitary waves; these are not solvable in analytical terms, but are easily integrated numerically. The conditions for existence of solitary waves are not satisfied for trivial asymptotic behavior and physical values of the parameters, i.e., the Barbi-Cocco-Peyrard model admits only solitary wave solutions that entail a global modification of the molecule; this is compared with the situation met in another recently formulated class of DNA models with two degrees of freedom per site.

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Year:  2008        PMID: 18763976     DOI: 10.1103/PhysRevE.78.011901

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  2 in total

1.  On the mechanical analogue of DNA.

Authors:  Ludmila Yakushevich
Journal:  J Biol Phys       Date:  2016-12-30       Impact factor: 1.365

Review 2.  Ideas and methods of nonlinear mathematics and theoretical physics in DNA science: the McLaughlin-Scott equation and its application to study the DNA open state dynamics.

Authors:  Ludmila V Yakushevich; Larisa A Krasnobaeva
Journal:  Biophys Rev       Date:  2021-05-13
  2 in total

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