Literature DB >> 18761469

Structural proteomics by NMR spectroscopy.

Joon Shin1, Woonghee Lee, Weontae Lee.   

Abstract

Structural proteomics is one of the powerful research areas in the postgenomic era, elucidating structure-function relationships of uncharacterized gene products based on the 3D protein structure. It proposes biochemical and cellular functions of unannotated proteins and thereby identifies potential drug design and protein engineering targets. Recently, a number of pioneering groups in structural proteomics research have achieved proof of structural proteomic theory by predicting the 3D structures of hypothetical proteins that successfully identified the biological functions of those proteins. The pioneering groups made use of a number of techniques, including NMR spectroscopy, which has been applied successfully to structural proteomics studies over the past 10 years. In addition, advances in hardware design, data acquisition methods, sample preparation and automation of data analysis have been developed and successfully applied to high-throughput structure determination techniques. These efforts ensure that NMR spectroscopy will become an important methodology for performing structural proteomics research on a genomic scale. NMR-based structural proteomics together with x-ray crystallography will provide a comprehensive structural database to predict the basic biological functions of hypothetical proteins identified by the genome projects.

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Year:  2008        PMID: 18761469     DOI: 10.1586/14789450.5.4.589

Source DB:  PubMed          Journal:  Expert Rev Proteomics        ISSN: 1478-9450            Impact factor:   3.940


  19 in total

1.  Backbone and sidechain resonance assignments and secondary structure of Scc4 from Chlamydia trachomatis.

Authors:  Thilini O Ukwaththage; Marco Tonelli; Megan A Macnaughtan
Journal:  Biomol NMR Assign       Date:  2020-07-02       Impact factor: 0.746

2.  At sixes and sevens: cryptic domain in the metal binding chain of the human copper transporter ATP7A.

Authors:  Eva-Maria E Uhlemann; Woonghee Lee; Marco Tonelli; Oleg Y Dmitriev
Journal:  Biophys J       Date:  2021-08-28       Impact factor: 3.699

3.  Solution structure and dynamics of the mitochondrial-targeted GTPase-activating protein (GAP) VopE by an integrated NMR/SAXS approach.

Authors:  Kyle P Smith; Woonghee Lee; Marco Tonelli; Yeongjoon Lee; Samuel H Light; Gabriel Cornilescu; Srinivas Chakravarthy
Journal:  Protein Sci       Date:  2022-05       Impact factor: 6.993

4.  iPick: Multiprocessing software for integrated NMR signal detection and validation.

Authors:  Mehdi Rahimi; Yeongjoon Lee; John L Markley; Woonghee Lee
Journal:  J Magn Reson       Date:  2021-05-07       Impact factor: 2.229

5.  Hydrophilic aromatic residue and in silico structure for carbohydrate binding module.

Authors:  Wei-Yao Chou; Tun-Wen Pai; Ting-Ying Jiang; Wei-I Chou; Chuan-Yi Tang; Margaret Dah-Tsyr Chang
Journal:  PLoS One       Date:  2011-09-22       Impact factor: 3.240

6.  Toho-1 β-lactamase: backbone chemical shift assignments and changes in dynamics upon binding with avibactam.

Authors:  Varun V Sakhrani; Rittik K Ghosh; Eduardo Hilario; Kevin L Weiss; Leighton Coates; Leonard J Mueller
Journal:  J Biomol NMR       Date:  2021-07-04       Impact factor: 2.582

7.  NMRFAM-SDF: a protein structure determination framework.

Authors:  Hesam Dashti; Woonghee Lee; Marco Tonelli; Claudia C Cornilescu; Gabriel Cornilescu; Fariba M Assadi-Porter; William M Westler; Hamid R Eghbalnia; John L Markley
Journal:  J Biomol NMR       Date:  2015-04-22       Impact factor: 2.835

8.  Soluble cysteine-rich tick saliva proteins Salp15 and Iric-1 from E. coli.

Authors:  Philipp Kolb; Jolanta Vorreiter; Jüri Habicht; Detlef Bentrop; Reinhard Wallich; Michael Nassal
Journal:  FEBS Open Bio       Date:  2014-12-24       Impact factor: 2.693

9.  Solution structure of the 2A protease from a common cold agent, human rhinovirus C2, strain W12.

Authors:  Woonghee Lee; Kelly E Watters; Andrew T Troupis; Nichole M Reinen; Fabian P Suchy; Kylie L Moyer; Ronnie O Frederick; Marco Tonelli; David J Aceti; Ann C Palmenberg; John L Markley
Journal:  PLoS One       Date:  2014-06-17       Impact factor: 3.240

10.  Integrative NMR for biomolecular research.

Authors:  Woonghee Lee; Gabriel Cornilescu; Hesam Dashti; Hamid R Eghbalnia; Marco Tonelli; William M Westler; Samuel E Butcher; Katherine A Henzler-Wildman; John L Markley
Journal:  J Biomol NMR       Date:  2016-03-29       Impact factor: 2.835

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