Literature DB >> 18760390

Genome-wide SNP-based linkage scan identifies a locus on 8q24 for an age-related hearing impairment trait.

Jeroen R Huyghe1, Lut Van Laer, Jan-Jaap Hendrickx, Erik Fransen, Kelly Demeester, Vedat Topsakal, Sylvia Kunst, Minna Manninen, Mona Jensen, Amanda Bonaconsa, Manuela Mazzoli, Manuela Baur, Samuli Hannula, Elina Mäki-Torkko, Angeles Espeso, Els Van Eyken, Antonia Flaquer, Christian Becker, Dafydd Stephens, Martti Sorri, Eva Orzan, Michael Bille, Agnete Parving, Ilmari Pyykkö, Cor W R J Cremers, Hannie Kremer, Paul H Van de Heyning, Thomas F Wienker, Peter Nürnberg, Markus Pfister, Guy Van Camp.   

Abstract

Age-related hearing impairment (ARHI), or presbycusis, is a very common multifactorial disorder. Despite the knowledge that genetics play an important role in the etiology of human ARHI as revealed by heritability studies, to date, its precise genetic determinants remain elusive. Here we report the results of a cross-sectional family-based genetic study employing audiometric data. By using principal component analysis, we were able to reduce the dimensionality of this multivariate phenotype while capturing most of the variation and retaining biologically important features of the audiograms. We conducted a genome-wide association as well as a linkage scan with high-density SNP microarrays. Because of the presence of genetic population substructure, association testing was stratified after which evidence was combined by meta-analysis. No association signals reaching genome-wide significance were detected. Linkage analysis identified a linkage peak on 8q24.13-q24.22 for a trait correlated to audiogram shape. The signal reached genome-wide significance, as assessed by simulations. This finding represents the first locus for an ARHI trait.

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Year:  2008        PMID: 18760390      PMCID: PMC2556434          DOI: 10.1016/j.ajhg.2008.08.002

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  31 in total

1.  A principal-components approach based on heritability for combining phenotype information.

Authors:  J Ott; D Rabinowitz
Journal:  Hum Hered       Date:  1999-03       Impact factor: 0.444

2.  A note on exact tests of Hardy-Weinberg equilibrium.

Authors:  Janis E Wigginton; David J Cutler; Goncalo R Abecasis
Journal:  Am J Hum Genet       Date:  2005-03-23       Impact factor: 11.025

3.  Handling marker-marker linkage disequilibrium: pedigree analysis with clustered markers.

Authors:  Gonçalo R Abecasis; Janis E Wigginton
Journal:  Am J Hum Genet       Date:  2005-09-20       Impact factor: 11.025

4.  Description and primary results from an audiometric study of male twins.

Authors:  K K Karlsson; J R Harris; M Svartengren
Journal:  Ear Hear       Date:  1997-04       Impact factor: 3.570

Review 5.  Presbycusis.

Authors:  George A Gates; John H Mills
Journal:  Lancet       Date:  2005 Sep 24-30       Impact factor: 79.321

6.  Genomewide linkage analysis to presbycusis in the Framingham Heart Study.

Authors:  Anita L DeStefano; George A Gates; Nancy Heard-Costa; Richard H Myers; Clinton T Baldwin
Journal:  Arch Otolaryngol Head Neck Surg       Date:  2003-03

7.  Cochlear pathology in presbycusis.

Authors:  H F Schuknecht; M R Gacek
Journal:  Ann Otol Rhinol Laryngol       Date:  1993-01       Impact factor: 1.547

8.  Genetic associations in age-related hearing thresholds.

Authors:  G A Gates; N N Couropmitree; R H Myers
Journal:  Arch Otolaryngol Head Neck Surg       Date:  1999-06

Review 9.  Age-related hearing loss: the status of Schuknecht's typology.

Authors:  Kevin K Ohlemiller
Journal:  Curr Opin Otolaryngol Head Neck Surg       Date:  2004-10       Impact factor: 2.064

10.  Occupational noise, smoking, and a high body mass index are risk factors for age-related hearing impairment and moderate alcohol consumption is protective: a European population-based multicenter study.

Authors:  Erik Fransen; Vedat Topsakal; Jan-Jaap Hendrickx; Lut Van Laer; Jeroen R Huyghe; Els Van Eyken; Nele Lemkens; Samuli Hannula; Elina Mäki-Torkko; Mona Jensen; Kelly Demeester; Anke Tropitzsch; Amanda Bonaconsa; Manuela Mazzoli; Angeles Espeso; Katia Verbruggen; Joke Huyghe; Patrick L M Huygen; Sylvia Kunst; Minna Manninen; Amalia Diaz-Lacava; Michael Steffens; Thomas F Wienker; Ilmari Pyykkö; Cor W R J Cremers; Hannie Kremer; Ingeborg Dhooge; Dafydd Stephens; Eva Orzan; Markus Pfister; Michael Bille; Agnete Parving; Martti Sorri; Paul Van de Heyning; Guy Van Camp
Journal:  J Assoc Res Otolaryngol       Date:  2008-06-10
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  24 in total

1.  Alleles that modulate late life hearing in genetically heterogeneous mice.

Authors:  Jochen Schacht; Richard Altschuler; David T Burke; Shu Chen; David Dolan; Andrzej T Galecki; David Kohrman; Richard A Miller
Journal:  Neurobiol Aging       Date:  2012-02-02       Impact factor: 4.673

2.  Functional null mutations of MSRB3 encoding methionine sulfoxide reductase are associated with human deafness DFNB74.

Authors:  Zubair M Ahmed; Rizwan Yousaf; Byung Cheon Lee; Shaheen N Khan; Sue Lee; Kwanghyuk Lee; Tayyab Husnain; Atteeq Ur Rehman; Sarah Bonneux; Muhammad Ansar; Wasim Ahmad; Suzanne M Leal; Vadim N Gladyshev; Inna A Belyantseva; Guy Van Camp; Sheikh Riazuddin; Thomas B Friedman; Saima Riazuddin
Journal:  Am J Hum Genet       Date:  2010-12-23       Impact factor: 11.025

Review 3.  Deafness in the genomics era.

Authors:  A Eliot Shearer; Michael S Hildebrand; Christina M Sloan; Richard J H Smith
Journal:  Hear Res       Date:  2011-10-08       Impact factor: 3.208

4.  Genome-wide SNP analysis reveals no gain in power for association studies of common variants in the Finnish Saami.

Authors:  Jeroen R Huyghe; Erik Fransen; Samuli Hannula; Lut Van Laer; Els Van Eyken; Elina Mäki-Torkko; Alana Lysholm-Bernacchi; Pekka Aikio; Dietrich A Stephan; Martti Sorri; Matthew J Huentelman; Guy Van Camp
Journal:  Eur J Hum Genet       Date:  2009-11-25       Impact factor: 4.246

5.  The European GWAS-identified risk SNP rs457717 within IQGAP2 is not associated with age-related hearing impairment in Han male Chinese population.

Authors:  Huajie Luo; Hao Wu; Hailian Shen; Haifeng Chen; Tao Yang; Zhiwu Huang; Xiaojie Jin; Xiuhong Pang; Lei Li; Xianting Hu; Xuemei Jiang; Zhuping Fan; Jiping Li
Journal:  Eur Arch Otorhinolaryngol       Date:  2015-07-18       Impact factor: 2.503

6.  Association of a citrate synthase missense mutation with age-related hearing loss in A/J mice.

Authors:  Kenneth R Johnson; Leona H Gagnon; Chantal Longo-Guess; Kelly L Kane
Journal:  Neurobiol Aging       Date:  2011-07-30       Impact factor: 4.673

Review 7.  New treatment options for hearing loss.

Authors:  Ulrich Müller; Peter G Barr-Gillespie
Journal:  Nat Rev Drug Discov       Date:  2015-03-20       Impact factor: 84.694

8.  GRM7 variants associated with age-related hearing loss based on auditory perception.

Authors:  Dina L Newman; Laurel M Fisher; Jeffrey Ohmen; Robert Parody; Chin-To Fong; Susan T Frisina; Frances Mapes; David A Eddins; D Robert Frisina; Robert D Frisina; Rick A Friedman
Journal:  Hear Res       Date:  2012-10-25       Impact factor: 3.208

9.  A genome-wide association study for age-related hearing impairment in the Saami.

Authors:  Lut Van Laer; Jeroen R Huyghe; Samuli Hannula; Els Van Eyken; Dietrich A Stephan; Elina Mäki-Torkko; Pekka Aikio; Erik Fransen; Alana Lysholm-Bernacchi; Martti Sorri; Matthew J Huentelman; Guy Van Camp
Journal:  Eur J Hum Genet       Date:  2010-01-13       Impact factor: 4.246

10.  Tuberous sclerosis complex-mediated mTORC1 overactivation promotes age-related hearing loss.

Authors:  Xiaolong Fu; Xiaoyang Sun; Linqing Zhang; Yecheng Jin; Renjie Chai; Lili Yang; Aizhen Zhang; Xiangguo Liu; Xiaochun Bai; Jianfeng Li; Haibo Wang; Jiangang Gao
Journal:  J Clin Invest       Date:  2018-09-24       Impact factor: 14.808

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