Literature DB >> 18758844

Laccase gene composition and relative abundance in oak forest soil is not affected by short-term nitrogen fertilization.

Christian L Lauber1, Robert L Sinsabaugh, Donald R Zak.   

Abstract

Anthropogenic nitrogen (N) deposition affects a wide range of soil processes including phenol oxidase (PO) activity and soil organic matter dynamics. Depression of phenol oxidase activity in response to N saturation is believed to be mediated by the activity of white-rot basidiomycetes, whose production of extracellular oxidative enzymes can be limited by high N availability. We examined the effect of short-term N deposition on basidiomycete laccase gene diversity and relative abundance in temperate oak forest soil in which significant decreases in phenol oxidase and increased SOM have been recorded in response to experimental N deposition. UniFrac was used to compare the composition of laccase genes between three control- and three nitrogen-fertilized (80 kg(-1) ha(-1) per year) oak forest soils. The relative abundance of laccase genes was determined from qPCR analysis of laccase and basidiomycete ITS gene abundances. Our results indicate that there was no significant shift in the composition of laccase genes between control- and N-fertilized soils, nor was there a significant change in the relative abundance of laccase genes. These data suggest that N deposition effects on mineral soil PO activity do not result from changes in laccase gene diversity of white-rot basidiomycetes but are likely the result of altered microbial abundance or expression in this ecosystem type. Furthermore, laccase gene composition may be tied to factors that structure microbial communities in general, as soil laccase gene communities are more similar to other forest soils than with the corresponding litter.

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Year:  2008        PMID: 18758844     DOI: 10.1007/s00248-008-9437-0

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  14 in total

Review 1.  Laccases and other polyphenol oxidases in ecto- and ericoid mycorrhizal fungi.

Authors:  R M Burke; J W G Cairney
Journal:  Mycorrhiza       Date:  2002-04-05       Impact factor: 3.387

2.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

3.  Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays.

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Journal:  Appl Environ Microbiol       Date:  2005-07       Impact factor: 4.792

Review 4.  Fungal laccases - occurrence and properties.

Authors:  Petr Baldrian
Journal:  FEMS Microbiol Rev       Date:  2006-03       Impact factor: 16.408

5.  Comparison of fungal laccases and redox mediators in oxidation of a nonphenolic lignin model compound.

Authors:  K Li; F Xu; K E Eriksson
Journal:  Appl Environ Microbiol       Date:  1999-06       Impact factor: 4.792

6.  Molecular analysis of fungal communities and laccase genes in decomposing litter reveals differences among forest types but no impact of nitrogen deposition.

Authors:  Christopher B Blackwood; Mark P Waldrop; Donald R Zak; Robert L Sinsabaugh
Journal:  Environ Microbiol       Date:  2007-05       Impact factor: 5.491

Review 7.  [Decomposition of natural aromatic structures and xenobiotics by fungi].

Authors:  M L Rabinovich; A V Bolobova; L G Vasil'chenko
Journal:  Prikl Biokhim Mikrobiol       Date:  2004 Jan-Feb

8.  Microbial community structure and oxidative enzyme activity in nitrogen-amended north temperate forest soils.

Authors:  M Gallo; R Amonette; C Lauber; R L Sinsabaugh; D R Zak
Journal:  Microb Ecol       Date:  2004-06-10       Impact factor: 4.552

9.  UniFrac: a new phylogenetic method for comparing microbial communities.

Authors:  Catherine Lozupone; Rob Knight
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

10.  UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context.

Authors:  Catherine Lozupone; Micah Hamady; Rob Knight
Journal:  BMC Bioinformatics       Date:  2006-08-07       Impact factor: 3.169

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Journal:  Microb Ecol       Date:  2018-03-14       Impact factor: 4.552

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Authors:  Ursula Kües; Martin Rühl
Journal:  Curr Genomics       Date:  2011-04       Impact factor: 2.236

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Authors:  Yeming You; Juan Wang; Xueman Huang; Zuoxin Tang; Shirong Liu; Osbert J Sun
Journal:  Ecol Evol       Date:  2014-02-12       Impact factor: 2.912

4.  Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data.

Authors:  Micah Hamady; Catherine Lozupone; Rob Knight
Journal:  ISME J       Date:  2009-08-27       Impact factor: 10.302

5.  Primer Sets Developed for Functional Genes Reveal Shifts in Functionality of Fungal Community in Soils.

Authors:  S Emilia Hannula; Johannes A van Veen
Journal:  Front Microbiol       Date:  2016-11-29       Impact factor: 5.640

  5 in total

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