Literature DB >> 18755992

Understanding detection performance in public health surveillance: modeling aberrancy-detection algorithms.

David L Buckeridge1, Anna Okhmatovskaia, Samson Tu, Martin O'Connor, Csongor Nyulas, Mark A Musen.   

Abstract

OBJECTIVE: Statistical aberrancy-detection algorithms play a central role in automated public health systems, analyzing large volumes of clinical and administrative data in real-time with the goal of detecting disease outbreaks rapidly and accurately. Not all algorithms perform equally well in terms of sensitivity, specificity, and timeliness in detecting disease outbreaks and the evidence describing the relative performance of different methods is fragmented and mainly qualitative.
DESIGN: We developed and evaluated a unified model of aberrancy-detection algorithms and a software infrastructure that uses this model to conduct studies to evaluate detection performance. We used a task-analytic methodology to identify the common features and meaningful distinctions among different algorithms and to provide an extensible framework for gathering evidence about the relative performance of these algorithms using a number of evaluation metrics. We implemented our model as part of a modular software infrastructure (Biological Space-Time Outbreak Reasoning Module, or BioSTORM) that allows configuration, deployment, and evaluation of aberrancy-detection algorithms in a systematic manner. MEASUREMENT: We assessed the ability of our model to encode the commonly used EARS algorithms and the ability of the BioSTORM software to reproduce an existing evaluation study of these algorithms.
RESULTS: Using our unified model of aberrancy-detection algorithms, we successfully encoded the EARS algorithms, deployed these algorithms using BioSTORM, and were able to reproduce and extend previously published evaluation results.
CONCLUSION: The validated model of aberrancy-detection algorithms and its software implementation will enable principled comparison of algorithms, synthesis of results from evaluation studies, and identification of surveillance algorithms for use in specific public health settings.

Entities:  

Mesh:

Year:  2008        PMID: 18755992      PMCID: PMC2585528          DOI: 10.1197/jamia.M2799

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  18 in total

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Authors:  David L Buckeridge; Anna Okhmatovskaia; Samson Tu; Martin O'Connor; Csongor Nyulas; Mark A Musen
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

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8.  Box-Jenkins modelling in medical research.

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  12 in total

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2.  Adjusting outbreak detection algorithms for surveillance during epidemic and non-epidemic periods.

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4.  Software-engineering challenges of building and deploying reusable problem solvers.

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8.  Hand, foot and mouth disease in China: evaluating an automated system for the detection of outbreaks.

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9.  Syndromic surveillance in companion animals utilizing electronic medical records data: development and proof of concept.

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10.  Epidemic surveillance using an electronic medical record: an empiric approach to performance improvement.

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Journal:  PLoS One       Date:  2014-07-09       Impact factor: 3.240

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