Literature DB >> 18754994

A confident scale-space shape representation framework for cell migration detection.

K Zhang1, H Xiong, X Zhou, L Yang, Y-L Wang, S T C Wong.   

Abstract

Automated segmentation of time-lapse images is a method to facilitate the understanding of the intricate biological progression, e.g. cancer cell migration. To address this problem, we introduce a shape representation enhancement over popular snake models in the context of confident scale-space such that a higher level of interpretation can hopefully be achieved. Our proposed system consists of a hierarchical analytic framework including feedback loops, self-adaptive and demand-adaptive adjustment, incorporating a steerable boundary detail term constraint based on multiscale B-spline interpolation. To minimize the noise interference inherited from microscopy acquisition, the coarse boundary derived from the initial segmentation with refined watershed line is coupled with microscopy compensation using the mean shift filtering. A progressive approximation is applied to achieve represented as a balance between a relief function of watershed algorithm and local minima concerning multiscale optimality, convergence and robust constraints. Experimental results show that the proposed method overcomes problems with spurious branches, arbitrary gaps, low contrast boundaries and low signal-to-noise ratio. The proposed system has the potential to serve as an automated data processing tool for cell migration applications.

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Mesh:

Year:  2008        PMID: 18754994      PMCID: PMC2896032          DOI: 10.1111/j.1365-2818.2008.02050.x

Source DB:  PubMed          Journal:  J Microsc        ISSN: 0022-2720            Impact factor:   1.758


  11 in total

1.  Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm.

Authors:  Y Zhang; M Brady; S Smith
Journal:  IEEE Trans Med Imaging       Date:  2001-01       Impact factor: 10.048

2.  Secondary phase distribution analysis via finite body tessellation

Authors: 
Journal:  J Microsc       Date:  1999-08       Impact factor: 1.758

3.  Grain size distribution analysis in polycrystalline LiF thin films by mathematical morphology techniques on AFM images and X-ray diffraction data.

Authors: 
Journal:  J Microsc       Date:  2000-03       Impact factor: 1.758

4.  Segmentation of nuclei and cells using membrane related protein markers.

Authors:  C O De Solorzano; R Malladi; S A Lelièvre; S J Lockett
Journal:  J Microsc       Date:  2001-03       Impact factor: 1.758

5.  Tracking leukocytes in vivo with shape and size constrained active contours.

Authors:  Nilanjan Ray; Scott T Acton; Klaus Ley
Journal:  IEEE Trans Med Imaging       Date:  2002-10       Impact factor: 10.048

6.  Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections.

Authors:  C Wählby; I-M Sintorn; F Erlandsson; G Borgefors; E Bengtsson
Journal:  J Microsc       Date:  2004-07       Impact factor: 1.758

7.  Image analysis for assessing molecular activity changes in time-dependent geometries.

Authors:  Kostas Marias; Jorge Ripoll; Heiko Meyer; Vasilis Ntziachristos; Stelios Orphanoudakis
Journal:  IEEE Trans Med Imaging       Date:  2005-07       Impact factor: 10.048

8.  Medical images edge detection based on mathematical morphology.

Authors:  Zhao Yu-Qian; Gui Wei-Hua; Chen Zhen-Cheng; Tang Jing-Tian; Li Ling-Yun
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2005

9.  Automated analysis of nerve-cell images using active contour models.

Authors:  Y L Fok; J K Chan; R T Chin
Journal:  IEEE Trans Med Imaging       Date:  1996       Impact factor: 10.048

10.  Automated segmentation of muscle fiber images using active contour models.

Authors:  A Klemencic; S Kovacic; F Pernus
Journal:  Cytometry       Date:  1998-08-01
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  1 in total

1.  Implementation of new software for fast screening of cell compatibility on surface modifications using low-contrast time-lapsed microscopy.

Authors:  Dan Dominik Brüllmann; Marc O Klein; Bilal Al-Nawas; Sigrid Horn; Verena Büsser; Barbara Jung; Wilfried Wagner; Bernd d'Hoedt
Journal:  Clin Oral Investig       Date:  2009-08-21       Impact factor: 3.573

  1 in total

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