Literature DB >> 18754634

COSMOmic: a mechanistic approach to the calculation of membrane-water partition coefficients and internal distributions within membranes and micelles.

Andreas Klamt1, Uwe Huniar, Simon Spycher, Jörg Keldenich.   

Abstract

A new approach for the modeling of molecules in micellar systems and especially in biomembranes, COSMOmic, is presented, and its performance is validated on the example of the partitioning of molecules between water and biological membranes. Starting from quantum chemical calculations of the surfactant, solvent, and solute molecules, and being based on the COSMO-RS method for fluid-phase thermodynamic properties, COSMOmic is essentially free of additional adjustable parameters. The inclusion of an elastic energy correction into the COSMOmic model did not turn out to yield any significant improvement. The novel COSMOmic method allows for the efficient prediction of the distribution of molecules in micellar systems.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18754634     DOI: 10.1021/jp801736k

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  10 in total

Review 1.  Molecular Dynamics Simulations of Membrane Permeability.

Authors:  Richard M Venable; Andreas Krämer; Richard W Pastor
Journal:  Chem Rev       Date:  2019-02-12       Impact factor: 60.622

2.  Physics-Based Method for Modeling Passive Membrane Permeability and Translocation Pathways of Bioactive Molecules.

Authors:  Andrei L Lomize; Irina D Pogozheva
Journal:  J Chem Inf Model       Date:  2019-07-01       Impact factor: 4.956

3.  Predicting Partition Coefficients of Neutral and Charged Solutes in the Mixed SLES-Fatty Acid Micellar System.

Authors:  Mattia Turchi; Abhishek A Kognole; Anmol Kumar; Qiong Cai; Guoping Lian; Alexander D MacKerell
Journal:  J Phys Chem B       Date:  2020-02-25       Impact factor: 2.991

4.  Functional Group Distributions, Partition Coefficients, and Resistance Factors in Lipid Bilayers Using Site Identification by Ligand Competitive Saturation.

Authors:  Christoffer Lind; Poonam Pandey; Richard W Pastor; Alexander D MacKerell
Journal:  J Chem Theory Comput       Date:  2021-04-30       Impact factor: 6.006

5.  Can cloud point-based enrichment, preservation, and detection methods help to bridge gaps in aquatic nanometrology?

Authors:  Lars Duester; Anne-Lena Fabricius; Sven Jakobtorweihen; Allan Philippe; Florian Weigl; Andreas Wimmer; Michael Schuster; Muhammad Faizan Nazar
Journal:  Anal Bioanal Chem       Date:  2016-08-24       Impact factor: 4.142

6.  MolMeDB: Molecules on Membranes Database.

Authors:  Jakub Juračka; Martin Šrejber; Michaela Melíková; Václav Bazgier; Karel Berka
Journal:  Database (Oxford)       Date:  2019-01-01       Impact factor: 3.451

7.  Molecular simulations of lipid membrane partitioning and translocation by bacterial quorum sensing modulators.

Authors:  Tianyi Jin; Samarthaben J Patel; Reid C Van Lehn
Journal:  PLoS One       Date:  2021-02-09       Impact factor: 3.240

8.  Charged Small Molecule Binding to Membranes in MD Simulations Evaluated against NMR Experiments.

Authors:  Ricky Nencini; O H Samuli Ollila
Journal:  J Phys Chem B       Date:  2022-09-05       Impact factor: 3.466

9.  Structure-based prediction of drug distribution across the headgroup and core strata of a phospholipid bilayer using surrogate phases.

Authors:  Senthil Natesan; Viera Lukacova; Ming Peng; Rajesh Subramaniam; Sandra Lynch; Zhanbin Wang; Roman Tandlich; Stefan Balaz
Journal:  Mol Pharm       Date:  2014-09-18       Impact factor: 4.939

10.  Concentration of Antioxidant Compounds from Calendula officinalis through Sustainable Supercritical Technologies, and Computational Study of Their Permeability in Skin for Cosmetic Use.

Authors:  Raquel Mur; Elisa Langa; M Rosa Pino-Otín; José S Urieta; Ana M Mainar
Journal:  Antioxidants (Basel)       Date:  2021-12-30
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.