Literature DB >> 18721164

An illustrated gardener's guide to transgenic Arabidopsis field experiments.

Martin Frenkel1, Hanna Johansson Jänkänpää2, Jon Moen1, Stefan Jansson2.   

Abstract

Field studies with transgenic Arabidopsis lines have been performed over 8 yr, to better understand the influence that certain genes have on plant performance. Many (if not most) plant phenotypes cannot be observed under the near constant, low-stress conditions in growth chambers, making field experiments necessary. However, there are challenges in performing such experiments: permission must be obtained and regulations obeyed, the profound influence of uncontrollable biotic and abiotic factors has to be considered, and experimental design has to be strictly controlled. The aim here is to provide inspiration and guidelines for researchers who are not used to setting up such experiments, allowing others to learn from our mistakes. This is believed to be the first example of a 'manual' for field experiments with transgenic Arabidopsis plants. Many of the challenges encountered are common for all field experiments, and many researchers from ecological backgrounds are skilled in such methods. There is huge potential in combining the detailed mechanistic understanding of molecular biologists with ecologists' expertise in examining plant performance under field conditions, and it is suggested that more interdisciplinary collaborations will open up new scientific avenues to aid analyses of the roles of genetic and physiological variation in natural systems.

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Year:  2008        PMID: 18721164     DOI: 10.1111/j.1469-8137.2008.02591.x

Source DB:  PubMed          Journal:  New Phytol        ISSN: 0028-646X            Impact factor:   10.151


  11 in total

Review 1.  Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana.

Authors:  Joy Bergelson; Fabrice Roux
Journal:  Nat Rev Genet       Date:  2010-12       Impact factor: 53.242

2.  The photosystem II light-harvesting protein Lhcb3 affects the macrostructure of photosystem II and the rate of state transitions in Arabidopsis.

Authors:  Jakob T Damkjaer; Sami Kereïche; Matthew P Johnson; Laszlo Kovacs; Anett Z Kiss; Egbert J Boekema; Alexander V Ruban; Peter Horton; Stefan Jansson
Journal:  Plant Cell       Date:  2009-10-30       Impact factor: 11.277

3.  PROTON GRADIENT REGULATION5 is essential for proper acclimation of Arabidopsis photosystem I to naturally and artificially fluctuating light conditions.

Authors:  Marjaana Suorsa; Sari Järvi; Michele Grieco; Markus Nurmi; Malgorzata Pietrzykowska; Marjaana Rantala; Saijaliisa Kangasjärvi; Virpi Paakkarinen; Mikko Tikkanen; Stefan Jansson; Eva-Mari Aro
Journal:  Plant Cell       Date:  2012-07-20       Impact factor: 11.277

4.  Fine-Tuning of Photosynthesis Requires CURVATURE THYLAKOID1-Mediated Thylakoid Plasticity.

Authors:  Mathias Pribil; Omar Sandoval-Ibáñez; Wenteng Xu; Anurag Sharma; Mathias Labs; Qiuping Liu; Carolina Galgenmüller; Trang Schneider; Malgorzata Wessels; Shizue Matsubara; Stefan Jansson; Gerhard Wanner; Dario Leister
Journal:  Plant Physiol       Date:  2018-01-26       Impact factor: 8.340

5.  Arabidopsis plants grown in the field and climate chambers significantly differ in leaf morphology and photosystem components.

Authors:  Yogesh Mishra; Hanna Johansson Jänkänpää; Anett Z Kiss; Christiane Funk; Wolfgang P Schröder; Stefan Jansson
Journal:  BMC Plant Biol       Date:  2012-01-11       Impact factor: 4.215

6.  Effect of climate change on bud phenology of young aspen plants (Populus tremula. L).

Authors:  Unnikrishnan Sivadasan; Tendry Randriamanana; Cao Chenhao; Virpi Virjamo; Line Nybakken; Riitta Julkunen-Tiitto
Journal:  Ecol Evol       Date:  2017-09-01       Impact factor: 2.912

7.  Reduced expression of the proteolytically inactive FtsH members has impacts on the Darwinian fitness of Arabidopsis thaliana.

Authors:  Laxmi S Mishra; Kati Mielke; Raik Wagner; Christiane Funk
Journal:  J Exp Bot       Date:  2019-04-12       Impact factor: 6.992

8.  The Plastid-Localized AtFtsHi3 Pseudo-Protease of Arabidopsis thaliana Has an Impact on Plant Growth and Drought Tolerance.

Authors:  Laxmi S Mishra; Sanatkumar Mishra; Daniel F Caddell; Devin Coleman-Derr; Christiane Funk
Journal:  Front Plant Sci       Date:  2021-06-23       Impact factor: 5.753

9.  Acclimation and interaction between drought and elevated UV-B in A. thaliana: Differences in response over treatment, recovery and reproduction.

Authors:  David Comont; Ana Winters; Dylan Gwynn-Jones
Journal:  Ecol Evol       Date:  2012-09-27       Impact factor: 2.912

10.  Non-photochemical quenching capacity in Arabidopsis thaliana affects herbivore behaviour.

Authors:  Hanna Johansson Jänkänpää; Martin Frenkel; Ismayil Zulfugarov; Michael Reichelt; Anja Krieger-Liszkay; Yogesh Mishra; Jonathan Gershenzon; Jon Moen; Choon-Hwan Lee; Stefan Jansson
Journal:  PLoS One       Date:  2013-01-02       Impact factor: 3.240

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