Literature DB >> 18715003

Thermodynamic and structural basis of phosphorylation-induced disorder-to-order transition in the regulatory light chain of smooth muscle myosin.

L Michel Espinoza-Fonseca1, David Kast, David D Thomas.   

Abstract

We have performed molecular dynamics simulations of the phosphorylation domain (PD) of the regulatory light chain (RLC) of smooth muscle myosin, to gain insight into the thermodynamic principles governing the phosphorylation-induced disorder-to-order transition. Simulations were performed in explicit water under near-physiological conditions, starting with an ideal alpha-helix. In the absence of phosphorylation, the helical periodicity of the peptide was disrupted at residues T9-K11, while phosphorylation significantly favored the helical periodicity, in agreement with experimental data. Using the MM/PBSA approach, we calculated a relative free energy of -7.1 kcal/mol for the disorder-to-order transition. A large enthalpic decrease was compensated by a large loss of conformational entropy, despite the small helical increase (no more than three residues) upon phosphorylation. Phosphorylation decreased the conformational dynamics of K and R side chains, especially R16, which forms a salt bridge with pS19. Mutation of R16 to A or E prevented this phosphorylation-dependent ordering. We propose that phosphorylation balances the enthalpy-entropy compensation of the disorder-to-order transition of RLC via short and long-range electrostatic interactions with positively charged residues of the phosphorylation domain. We suggest that this balance is necessary to induce a disorder-to-order conformational change through a subtle energy switching.

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Year:  2008        PMID: 18715003      PMCID: PMC2875193          DOI: 10.1021/ja803143g

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  16 in total

1.  Improved treatment of the protein backbone in empirical force fields.

Authors:  Alexander D MacKerell; Michael Feig; Charles L Brooks
Journal:  J Am Chem Soc       Date:  2004-01-28       Impact factor: 15.419

2.  Site-directed spin labeling reveals a conformational switch in the phosphorylation domain of smooth muscle myosin.

Authors:  Wendy D Nelson; Sarah E Blakely; Yuri E Nesmelov; David D Thomas
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-07       Impact factor: 11.205

3.  The alpha-helical propensity of the cytoplasmic domain of phospholamban: a molecular dynamics simulation of the effect of phosphorylation and mutation.

Authors:  M Germana Paterlini; David D Thomas
Journal:  Biophys J       Date:  2005-03-11       Impact factor: 4.033

4.  Serine 16 phosphorylation induces an order-to-disorder transition in monomeric phospholamban.

Authors:  Emily E Metcalfe; Nathaniel J Traaseth; Gianluigi Veglia
Journal:  Biochemistry       Date:  2005-03-22       Impact factor: 3.162

5.  Scalable molecular dynamics with NAMD.

Authors:  James C Phillips; Rosemary Braun; Wei Wang; James Gumbart; Emad Tajkhorshid; Elizabeth Villa; Christophe Chipot; Robert D Skeel; Laxmikant Kalé; Klaus Schulten
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

6.  Molecular dynamics simulations reveal a disorder-to-order transition on phosphorylation of smooth muscle myosin.

Authors:  L Michel Espinoza-Fonseca; David Kast; David D Thomas
Journal:  Biophys J       Date:  2007-06-01       Impact factor: 4.033

7.  Mechanism of the phosphorylation-dependent regulation of smooth muscle heavy meromyosin.

Authors:  J R Sellers
Journal:  J Biol Chem       Date:  1985-12-15       Impact factor: 5.157

8.  Strengths of hydrogen bonds involving phosphorylated amino acid side chains.

Authors:  Daniel J Mandell; Ilya Chorny; Eli S Groban; Sergio E Wong; Elisheva Levine; Chaya S Rapp; Matthew P Jacobson
Journal:  J Am Chem Soc       Date:  2007-01-31       Impact factor: 15.419

9.  Charge replacement near the phosphorylatable serine of the myosin regulatory light chain mimics aspects of phosphorylation.

Authors:  H L Sweeney; Z Yang; G Zhi; J T Stull; K M Trybus
Journal:  Proc Natl Acad Sci U S A       Date:  1994-02-15       Impact factor: 11.205

10.  Function of the NH2-terminal domain of the regulatory light chain on the regulation of smooth muscle myosin.

Authors:  M Ikebe; R Ikebe; H Kamisoyama; S Reardon; J P Schwonek; C R Sanders; M Matsuura
Journal:  J Biol Chem       Date:  1994-11-11       Impact factor: 5.157

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  31 in total

1.  Phosphorylation-induced structural changes in smooth muscle myosin regulatory light chain.

Authors:  David Kast; L Michel Espinoza-Fonseca; Christina Yi; David D Thomas
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-19       Impact factor: 11.205

2.  Crystal structure of a phosphorylated light chain domain of scallop smooth-muscle myosin.

Authors:  V S Senthil Kumar; Elizabeth O'Neall-Hennessey; Ludmila Reshetnikova; Jerry H Brown; Howard Robinson; Andrew G Szent-Györgyi; Carolyn Cohen
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

3.  Folding of an intrinsically disordered protein by phosphorylation as a regulatory switch.

Authors:  Alaji Bah; Robert M Vernon; Zeba Siddiqui; Mickaël Krzeminski; Ranjith Muhandiram; Charlie Zhao; Nahum Sonenberg; Lewis E Kay; Julie D Forman-Kay
Journal:  Nature       Date:  2014-12-22       Impact factor: 49.962

4.  Tarantula myosin free head regulatory light chain phosphorylation stiffens N-terminal extension, releasing it and blocking its docking back.

Authors:  Lorenzo Alamo; Xiaochuan Edward Li; L Michel Espinoza-Fonseca; Antonio Pinto; David D Thomas; William Lehman; Raúl Padrón
Journal:  Mol Biosyst       Date:  2015-08

5.  Sequential myosin phosphorylation activates tarantula thick filament via a disorder-order transition.

Authors:  L Michel Espinoza-Fonseca; Lorenzo Alamo; Antonio Pinto; David D Thomas; Raúl Padrón
Journal:  Mol Biosyst       Date:  2015-08

Review 6.  Dynamic Protein Interaction Networks and New Structural Paradigms in Signaling.

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Journal:  Chem Rev       Date:  2016-02-29       Impact factor: 60.622

7.  Effects of pseudophosphorylation mutants on the structural dynamics of smooth muscle myosin regulatory light chain.

Authors:  L Michel Espinoza-Fonseca; Brett A Colson; David D Thomas
Journal:  Mol Biosyst       Date:  2014-10

8.  Graphlet kernels for prediction of functional residues in protein structures.

Authors:  Vladimir Vacic; Lilia M Iakoucheva; Stefano Lonardi; Predrag Radivojac
Journal:  J Comput Biol       Date:  2010-01       Impact factor: 1.479

9.  The on-off switch in regulated myosins: different triggers but related mechanisms.

Authors:  Daniel M Himmel; Suet Mui; Elizabeth O'Neall-Hennessey; Andrew G Szent-Györgyi; Carolyn Cohen
Journal:  J Mol Biol       Date:  2009-09-19       Impact factor: 5.469

10.  Role of the essential light chain in the activation of smooth muscle myosin by regulatory light chain phosphorylation.

Authors:  Kenneth A Taylor; Michael Feig; Charles L Brooks; Patricia M Fagnant; Susan Lowey; Kathleen M Trybus
Journal:  J Struct Biol       Date:  2013-12-19       Impact factor: 2.867

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