Literature DB >> 18706810

Conformational analysis of a covalently cross-linked Watson-Crick base pair model.

Erik A Jensen1, Benjamin D Allen, Yoshito Kishi, Daniel J O'Leary.   

Abstract

Low-temperature NMR experiments and molecular modeling have been used to characterize the conformational behavior of a covalently cross-linked DNA base pair model. The data suggest that Watson-Crick or reverse Watson-Crick hydrogen bonding geometries have similar energies and can interconvert at low temperatures. This low-temperature process involves rotation about the crosslink CH(2)C(5') (psi) carbon-carbon bond, which is energetically preferred over the alternate CH(2)N(3) (phi) carbon-nitrogen bond rotation.

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Year:  2008        PMID: 18706810      PMCID: PMC2590868          DOI: 10.1016/j.bmcl.2008.07.113

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  4 in total

1.  Solution structure of n-type DNA oligomers possessing a covalently cross-linked Watson-Crick base pair model.

Authors:  H Y Li; Y L Qiu; Y Kishi
Journal:  Chembiochem       Date:  2001-05-04       Impact factor: 3.164

2.  Synthesis of DNA Oligomers Possessing a Covalently Cross-Linked Watson-Crick Base Pair Model Financial support from the National Institutes of Health (Grant: NS 12108) is gratefully acknowledged.

Authors:  Hong-Yu Li; Yao-Ling Qiu; Elisabeth Moyroud; Yoshito Kishi
Journal:  Angew Chem Int Ed Engl       Date:  2001-04-17       Impact factor: 15.336

3.  Interstrand cross-linking by bizelesin produces a Watson-Crick to Hoogsteen base-pairing transition region in d(CGTAATTACG)2.

Authors:  F C Seaman; L Hurley
Journal:  Biochemistry       Date:  1993-11-30       Impact factor: 3.162

4.  A novel combined chemical-enzymatic synthesis of cross-linked DNA using a nucleoside triphosphate analogue.

Authors:  M Cowart; S J Benkovic
Journal:  Biochemistry       Date:  1991-01-22       Impact factor: 3.162

  4 in total

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