Literature DB >> 18703705

A decade of genome-wide gene expression profiling in acute myeloid leukemia: flashback and prospects.

Bas J Wouters1, Bob Löwenberg, Ruud Delwel.   

Abstract

The past decade has shown a marked increase in the use of high-throughput assays in clinical research into human cancer, including acute myeloid leukemia (AML). In particular, genome-wide gene expression profiling (GEP) using DNA microarrays has been extensively used for improved understanding of the diagnosis, prognosis, and pathobiology of this heterogeneous disease. This review discusses the progress that has been made, places the technologic limitations in perspective, and highlights promising future avenues.

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Year:  2008        PMID: 18703705      PMCID: PMC2615646          DOI: 10.1182/blood-2008-04-153239

Source DB:  PubMed          Journal:  Blood        ISSN: 0006-4971            Impact factor:   22.113


  100 in total

Review 1.  How does gene expression clustering work?

Authors:  Patrik D'haeseleer
Journal:  Nat Biotechnol       Date:  2005-12       Impact factor: 54.908

Review 2.  Microarray expression technology: from start to finish.

Authors:  Gareth Elvidge
Journal:  Pharmacogenomics       Date:  2006-01       Impact factor: 2.533

3.  Identification of distinct molecular phenotypes in acute megakaryoblastic leukemia by gene expression profiling.

Authors:  Jean-Pierre Bourquin; Aravind Subramanian; Claudia Langebrake; Dirk Reinhardt; Olivier Bernard; Paola Ballerini; André Baruchel; Hélène Cavé; Nicole Dastugue; Henrik Hasle; Gertjan L Kaspers; Michel Lessard; Lucienne Michaux; Paresh Vyas; Elisabeth van Wering; Christian M Zwaan; Todd R Golub; Stuart H Orkin
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-21       Impact factor: 11.205

4.  Genomewide array-based comparative genomic hybridization analysis of acute promyelocytic leukemia.

Authors:  Sivasundaram Karnan; Shinobu Tsuzuki; Hitoshi Kiyoi; Hiroyuki Tagawa; Ryozo Ueda; Masao Seto; Tomoki Naoe
Journal:  Genes Chromosomes Cancer       Date:  2006-04       Impact factor: 5.006

5.  Gene expression profiling of acute promyelocytic leukaemia identifies two subtypes mainly associated with flt3 mutational status.

Authors:  R Marasca; R Maffei; P Zucchini; I Castelli; A Saviola; S Martinelli; A Ferrari; M Fontana; S Ravanetti; G Torelli
Journal:  Leukemia       Date:  2006-01       Impact factor: 11.528

6.  Multicenter validation of a gene expression-based prognostic signature in lymph node-negative primary breast cancer.

Authors:  John A Foekens; David Atkins; Yi Zhang; Fred C G J Sweep; Nadia Harbeck; Angelo Paradiso; Tanja Cufer; Anieta M Sieuwerts; Dmitri Talantov; Paul N Span; Vivianne C G Tjan-Heijnen; Alfredo F Zito; Katja Specht; Heinz Hoefler; Rastko Golouh; Francesco Schittulli; Manfred Schmitt; Louk V A M Beex; Jan G M Klijn; Yixin Wang
Journal:  J Clin Oncol       Date:  2006-02-27       Impact factor: 44.544

7.  A loss-of-function RNA interference screen for molecular targets in cancer.

Authors:  Vu N Ngo; R Eric Davis; Laurence Lamy; Xin Yu; Hong Zhao; Georg Lenz; Lloyd T Lam; Sandeep Dave; Liming Yang; John Powell; Louis M Staudt
Journal:  Nature       Date:  2006-03-29       Impact factor: 49.962

8.  Significance of murine retroviral mutagenesis for identification of disease genes in human acute myeloid leukemia.

Authors:  Stefan J Erkeland; Roel G W Verhaak; Peter J M Valk; Ruud Delwel; Bob Löwenberg; Ivo P Touw
Journal:  Cancer Res       Date:  2006-01-15       Impact factor: 12.701

9.  A single nucleotide polymorphism chip-based method for combined genetic and epigenetic profiling: validation in decitabine therapy and tumor/normal comparisons.

Authors:  Eric Yuan; Fatemeh Haghighi; Susan White; Ramiro Costa; Julie McMinn; Kathy Chun; Mark Minden; Benjamin Tycko
Journal:  Cancer Res       Date:  2006-04-01       Impact factor: 12.701

10.  High-resolution genome-wide array-based comparative genome hybridization reveals cryptic chromosome changes in AML and MDS cases with trisomy 8 as the sole cytogenetic aberration.

Authors:  K Paulsson; M Heidenblad; B Strömbeck; J Staaf; G Jönsson; A Borg; T Fioretos; B Johansson
Journal:  Leukemia       Date:  2006-05       Impact factor: 11.528

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  26 in total

Review 1.  Phenomics: the next challenge.

Authors:  David Houle; Diddahally R Govindaraju; Stig Omholt
Journal:  Nat Rev Genet       Date:  2010-12       Impact factor: 53.242

Review 2.  Acute myeloid leukemia: advancing clinical trials and promising therapeutics.

Authors:  Naval Daver; Jorge Cortes; Hagop Kantarjian; Farhad Ravandi
Journal:  Expert Rev Hematol       Date:  2016-03-17       Impact factor: 2.929

Review 3.  Biology, risk stratification, and therapy of pediatric acute leukemias: an update.

Authors:  Ching-Hon Pui; William L Carroll; Soheil Meshinchi; Robert J Arceci
Journal:  J Clin Oncol       Date:  2011-01-10       Impact factor: 44.544

Review 4.  MicroRNA expression in acute myeloid leukemia.

Authors:  Guido Marcucci; Michael D Radmacher; Krzysztof Mrózek; Clara D Bloomfield
Journal:  Curr Hematol Malig Rep       Date:  2009-04       Impact factor: 3.952

5.  Gene expression signature predicts relapse in adult patients with cytogenetically normal acute myeloid leukemia.

Authors:  Christopher J Walker; Krzysztof Mrózek; Hatice Gulcin Ozer; Deedra Nicolet; Jessica Kohlschmidt; Dimitrios Papaioannou; Luke K Genutis; Marius Bill; Bayard L Powell; Geoffrey L Uy; Jonathan E Kolitz; Andrew J Carroll; Richard M Stone; Ramiro Garzon; John C Byrd; Ann-Kathrin Eisfeld; Albert de la Chapelle; Clara D Bloomfield
Journal:  Blood Adv       Date:  2021-03-09

6.  Differential expression profiling between atypical teratoid/rhabdoid and medulloblastoma tumor in vitro and in vivo using microarray analysis.

Authors:  Hsin-I Ma; Chung-Lan Kao; Yi-Yen Lee; Guang-Yuh Chiou; Lung-Kuo Tai; Kai-Hsi Lu; Chi-Shuan Huang; Yi-Wei Chen; Shih-Hwa Chiou; Ing-Chan Cheng; Tai-Tong Wong
Journal:  Childs Nerv Syst       Date:  2009-11-10       Impact factor: 1.475

Review 7.  Genetic tests to evaluate prognosis and predict therapeutic response in acute myeloid leukemia.

Authors:  Margaret L Gulley; Thomas C Shea; Yuri Fedoriw
Journal:  J Mol Diagn       Date:  2009-12-03       Impact factor: 5.568

8.  Integrative meta-analysis of differential gene expression in acute myeloid leukemia.

Authors:  Brady G Miller; John A Stamatoyannopoulos
Journal:  PLoS One       Date:  2010-03-01       Impact factor: 3.240

9.  Detection of mutations in myeloid malignancies through paired-sample analysis of microdroplet-PCR deep sequencing data.

Authors:  Donavan T Cheng; Janice Cheng; Talia N Mitchell; Aijazuddin Syed; Ahmet Zehir; Nana Yaa T Mensah; Alifya Oultache; Khedoudja Nafa; Ross L Levine; Maria E Arcila; Michael F Berger; Cyrus V Hedvat
Journal:  J Mol Diagn       Date:  2014-07-10       Impact factor: 5.568

10.  Quantitative comparison of microarray experiments with published leukemia related gene expression signatures.

Authors:  Hans-Ulrich Klein; Christian Ruckert; Alexander Kohlmann; Lars Bullinger; Christian Thiede; Torsten Haferlach; Martin Dugas
Journal:  BMC Bioinformatics       Date:  2009-12-15       Impact factor: 3.169

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