Literature DB >> 18702533

Robust algorithms for automated chemical shift calibration of 1D 1H NMR spectra of blood serum.

Jake T M Pearce1, Toby J Athersuch, Timothy M D Ebbels, John C Lindon, Jeremy K Nicholson, Hector C Keun.   

Abstract

In biofluid NMR spectroscopy, the frequency of each resonance is typically calibrated by addition of a reference compound such as 3-(trimethylsilyl)-propionic acid- d 4 (TSP) to the sample. However biofluids such as serum cannot be referenced to TSP, due to shifts resonance caused by binding to macromolecules in solution. In order to overcome this limitation we have developed algorithms, based on analysis of derivative spectra, to locate and calibrate (1)H NMR spectra to the alpha-glucose anomeric doublet. We successfully used these algorithms to calibrate 77 serum (1)H NMR spectra and demonstrate the greater reproducibility of the calculated chemical-shift corrections ( r = 0.97) than those generated by manual alignment ( r = 0.8-0.88). Hence we show that these algorithms provide robust and reproducible methods of calibrating (1)H NMR of serum, plasma, or any biofluid in which glucose is abundant. Precise automated calibration of complex biofluid NMR spectra is an important tool in large-scale metabonomic or metabolomic studies, where hundreds or even thousands of spectra may be analyzed in high-resolution by pattern recognition analysis.

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Year:  2008        PMID: 18702533     DOI: 10.1021/ac8011494

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  10 in total

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Review 2.  Recommended strategies for spectral processing and post-processing of 1D 1H-NMR data of biofluids with a particular focus on urine.

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3.  Metabolic Profiling of Children Undergoing Surgery for Congenital Heart Disease.

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4.  A guide to the identification of metabolites in NMR-based metabonomics/metabolomics experiments.

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Journal:  Comput Struct Biotechnol J       Date:  2016-03-09       Impact factor: 7.271

5.  A Computationally Lightweight Algorithm for Deriving Reliable Metabolite Panel Measurements from 1D 1H NMR.

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6.  NMR-based metabolic profiling of children with premature adrenarche.

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7.  SMolESY: an efficient and quantitative alternative to on-instrument macromolecular 1H-NMR signal suppression.

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Review 8.  An Overview of Metabolic Phenotyping in Blood Pressure Research.

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Review 9.  High-Throughput Metabolomics by 1D NMR.

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10.  pJRES Binning Algorithm (JBA): a new method to facilitate the recovery of metabolic information from pJRES 1H NMR spectra.

Authors:  Andrea Rodriguez-Martinez; Rafael Ayala; Joram M Posma; Nikita Harvey; Beatriz Jiménez; Kazuhiro Sonomura; Taka-Aki Sato; Fumihiko Matsuda; Pierre Zalloua; Dominique Gauguier; Jeremy K Nicholson; Marc-Emmanuel Dumas
Journal:  Bioinformatics       Date:  2019-06-01       Impact factor: 6.937

  10 in total

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