Literature DB >> 18701530

PRODECOMPv3: decompositions of NMR projections for protein backbone and side-chain assignments and structural studies.

Doroteya K Staykova1, Jonas Fredriksson, Martin Billeter.   

Abstract

UNLABELLED: PRODECOMP (projection decomposition) is an implementation of a multi-way decomposition algorithm for the analysis of two-dimensional projections of high-dimensional nuclear magnetic resonance spectra. The newest version, PRODECOMPv3, features a dramatic speedup, more reliable decompositions, a substantial reduction in memory demands, a new graphical user interface and integration into third-party software. These improvements extend the applicability of decompositions to novel types of NMR data on proteins, yielding backbone and side-chain assignments as well as structural information, and therewith enabling complete characterizations of proteins. AVAILABILITY: Program, short manual and an example calculation are freely available at www2.chem.gu.se/bcbp/nmr/prodecomp.html.

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Year:  2008        PMID: 18701530     DOI: 10.1093/bioinformatics/btn423

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  2 in total

1.  Analytical solution to the coupled evolution of multidimensional NMR data.

Authors:  Geoffrey A Mueller
Journal:  J Biomol NMR       Date:  2009-03-24       Impact factor: 2.835

2.  Automated protein backbone assignment using the projection-decomposition approach.

Authors:  Jonas Fredriksson; Wolfgang Bermel; Doroteya K Staykova; Martin Billeter
Journal:  J Biomol NMR       Date:  2012-07-18       Impact factor: 2.835

  2 in total

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