Literature DB >> 18698721

Polarization of water in the first hydration shell of K+ and Ca2+ ions.

Denis Bucher1, Serdar Kuyucak.   

Abstract

Accurate representation of the interactions of water molecules with charges is essential for correct description of biomolecules and their interactions and, hence, is a primary concern in the design of classical force fields. This task is made even more challenging by the fact that the charge distribution of water molecules in liquid is significantly altered by the local environment. To understand how such polarization effects would modify the force fields, we have performed density functional calculations for ion-water clusters using K+ and Ca2+ ions as probes. We find that the dipole moment of water molecules in the first hydration shell decreases with increasing number of waters, which is explained by the suppression of the ion's electric field by those of water dipoles. Adding further water beyond the first shell, the dipole moment of the first shell waters increases because water dipoles are strongly polarized in the presence of hydrogen bond acceptors. Thus the net polarization of water in the hydration shell of an ion is determined by two competing effects, of which only one directly depends on the ion. These observations explain why the dipole moment of waters in the first hydration shell of a K+ ion is smaller compared to those in bulk water while the opposite is true for Ca2+ ions and suggest new constraints to be used in the development of polarizable water models.

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Year:  2008        PMID: 18698721     DOI: 10.1021/jp804694u

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  7 in total

1.  Coordination numbers of K(+) and Na(+) Ions inside the selectivity filter of the KcsA potassium channel: insights from first principles molecular dynamics.

Authors:  Denis Bucher; Leonardo Guidoni; Paolo Carloni; Ursula Rothlisberger
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

2.  Multibody effects in ion binding and selectivity.

Authors:  Sameer Varma; Susan B Rempe
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

Review 3.  Molecular dynamics simulations of membrane proteins.

Authors:  Turgut Baştuğ; Serdar Kuyucak
Journal:  Biophys Rev       Date:  2012-09-01

4.  Molecular simulations of ion channels: a quantum chemist's perspective.

Authors:  Denis Bucher; Ursula Rothlisberger
Journal:  J Gen Physiol       Date:  2010-06       Impact factor: 4.086

5.  Fluorescence of KCl Aqueous Solution: A Possible Spectroscopic Signature of Nucleation.

Authors:  Anna Maria Villa; Silvia Maria Doglia; Luca De Gioia; Antonino Natalello; Luca Bertini
Journal:  J Phys Chem B       Date:  2022-03-28       Impact factor: 2.991

6.  Na(+)/Ca(2+) selectivity in the bacterial voltage-gated sodium channel NavAb.

Authors:  Ben Corry
Journal:  PeerJ       Date:  2013-02-12       Impact factor: 2.984

Review 7.  Recent Advances in Polarizable Force Fields for Macromolecules: Microsecond Simulations of Proteins Using the Classical Drude Oscillator Model.

Authors:  Jing Huang; Pedro E M Lopes; Benoît Roux; Alexander D MacKerell
Journal:  J Phys Chem Lett       Date:  2014-08-27       Impact factor: 6.475

  7 in total

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