Literature DB >> 18693832

Combining contextual and lexical features to classify UMLS concepts.

Jung-Wei Fan1, Carol Friedman.   

Abstract

Semantic classification is important for biomedical terminologies and the many applications that depend on them. Previously we developed two classifiers for 8 broad clinically relevant classes to reclassify and validate UMLS concepts. We found them to be complementary, and then combined them using a manual approach. In this paper, we extended the classifiers by adding an "other" class to categorize concepts not belonging to any of the 8 classes. In addition, we focused on automating the method for combining the two classifiers by training a meta-classifier that performs dynamic combination to exploit the strength of each classifier. The automated method performed as well as manual combination, achieving classification accuracy of about 0.81.

Mesh:

Year:  2007        PMID: 18693832      PMCID: PMC2655898     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  4 in total

1.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

2.  Using name-internal and contextual features to classify biological terms.

Authors:  Manabu Torii; Sachin Kamboj; K Vijay-Shanker
Journal:  J Biomed Inform       Date:  2004-12       Impact factor: 6.317

Review 3.  Text mining and ontologies in biomedicine: making sense of raw text.

Authors:  Irena Spasic; Sophia Ananiadou; John McNaught; Anand Kumar
Journal:  Brief Bioinform       Date:  2005-09       Impact factor: 11.622

4.  Using contextual and lexical features to restructure and validate the classification of biomedical concepts.

Authors:  Jung-Wei Fan; Hua Xu; Carol Friedman
Journal:  BMC Bioinformatics       Date:  2007-07-24       Impact factor: 3.169

  4 in total
  1 in total

Review 1.  A review of auditing techniques for the Unified Medical Language System.

Authors:  Ling Zheng; Zhe He; Duo Wei; Vipina Keloth; Jung-Wei Fan; Luke Lindemann; Xinxin Zhu; James J Cimino; Yehoshua Perl
Journal:  J Am Med Inform Assoc       Date:  2020-10-01       Impact factor: 4.497

  1 in total

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