Literature DB >> 18693819

Using the UMLS Semantic Network to validate NCI Thesaurus structure and analyze its alignment with the OBO relations ontology.

Sherri de Coronado1, Mark S Tuttle, Harold R Solbrig.   

Abstract

NCI Thesaurus entries reference corresponding nodes in the UMLS Semantic Network (SN). Adapting a process previously used to refine relationship definitions in the UMLS Metathesaurus, we used these Thesaurus-to-Network references to analyze alignment of the Thesaurus with the OBO Relations Ontology and at the same time validate and improve Thesaurus structure. Given this experience, we offer suggestions for enhancement of the UMLS SN so that it can be even more useful in the future.

Mesh：

Year:  2007        PMID： 18693819      PMCID： PMC2655888     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN： 1559-4076


  6 in total

1.  Enhancing biomedical ontologies through alignment of semantic relationships: exploratory approaches.

Authors:  Lowell Vizenor; Olivier Bodenreider; Lee Peters; Alexa T McCray
Journal:  AMIA Annu Symp Proc       Date:  2006

2.  A terminological and ontological analysis of the NCI Thesaurus.

Authors:  W Ceusters; B Smith; L Goldberg
Journal:  Methods Inf Med       Date:  2005       Impact factor: 2.176

3.  caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid.

Authors:  Joel Saltz; Scott Oster; Shannon Hastings; Stephen Langella; Tahsin Kurc; William Sanchez; Manav Kher; Arumani Manisundaram; Krishnakant Shanbhag; Peter Covitz
Journal:  Bioinformatics       Date:  2006-06-09       Impact factor: 6.937

4.  NCI Thesaurus: using science-based terminology to integrate cancer research results.

Authors:  Sherri de Coronado; Margaret W Haber; Nicholas Sioutos; Mark S Tuttle; Lawrence W Wright
Journal:  Stud Health Technol Inform       Date:  2004

5.  Relations in biomedical ontologies.

Authors:  Barry Smith; Werner Ceusters; Bert Klagges; Jacob Köhler; Anand Kumar; Jane Lomax; Chris Mungall; Fabian Neuhaus; Alan L Rector; Cornelius Rosse
Journal:  Genome Biol       Date:  2005-04-28       Impact factor: 13.583

6.  An upper-level ontology for the biomedical domain.

Authors:  Alexa T McCray
Journal:  Comp Funct Genomics       Date:  2003
  6 in total
  4 in total

1.  Auditing the NCI thesaurus with semantic web technologies.

Authors:  Fleur Mougin; Olivier Bodenreider
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

2.  Complex overlapping concepts: An effective auditing methodology for families of similarly structured BioPortal ontologies.

Authors:  Ling Zheng; Yan Chen; Gai Elhanan; Yehoshua Perl; James Geller; Christopher Ochs
Journal:  J Biomed Inform       Date:  2018-05-28       Impact factor: 6.317

3.  Quality evaluation of value sets from cancer study common data elements using the UMLS semantic groups.

Authors:  Guoqian Jiang; Harold R Solbrig; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2012-04-17       Impact factor: 4.497

Review 4.  Evolvix BEST Names for semantic reproducibility across code2brain interfaces.

Authors:  Laurence Loewe; Katherine S Scheuer; Seth A Keel; Vaibhav Vyas; Ben Liblit; Bret Hanlon; Michael C Ferris; John Yin; Inês Dutra; Anthony Pietsch; Christine G Javid; Cecilia L Moog; Jocelyn Meyer; Jerdon Dresel; Brian McLoone; Sonya Loberger; Arezoo Movaghar; Morgaine Gilchrist-Scott; Yazeed Sabri; Dave Sescleifer; Ivan Pereda-Zorrilla; Andrew Zietlow; Rodrigo Smith; Samantha Pietenpol; Jacob Goldfinger; Sarah L Atzen; Erika Freiberg; Noah P Waters; Claire Nusbaum; Erik Nolan; Alyssa Hotz; Richard M Kliman; Ayalew Mentewab; Nathan Fregien; Martha Loewe
Journal:  Ann N Y Acad Sci       Date:  2016-12-05       Impact factor: 5.691
  4 in total

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