Literature DB >> 18688821

The curation guidelines of the immune epitope database and analysis resource.

R Vita1, B Peters, A Sette.   

Abstract

The IEDB houses antibody and T cell epitope data and makes them accessible and searchable. The curation of literature references requires explicit guidelines in order to capture the data in an objective and consistent manner. Description of these guidelines ensures transparency of the database and facilitates direct submissions to the database.

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Year:  2008        PMID: 18688821      PMCID: PMC2597159          DOI: 10.1002/cyto.a.20585

Source DB:  PubMed          Journal:  Cytometry A        ISSN: 1552-4922            Impact factor:   4.355


  6 in total

1.  The design and implementation of the immune epitope database and analysis resource.

Authors:  Bjoern Peters; John Sidney; Phil Bourne; Huynh-Hoa Bui; Soeren Buus; Grace Doh; Ward Fleri; Mitch Kronenberg; Ralph Kubo; Ole Lund; David Nemazee; Julia V Ponomarenko; Muthu Sathiamurthy; Stephen P Schoenberger; Scott Stewart; Pamela Surko; Scott Way; Steve Wilson; Alessandro Sette
Journal:  Immunogenetics       Date:  2005-05-14       Impact factor: 2.846

2.  Use of MHC class II tetramers to investigate CD4+ T cell responses: problems and solutions.

Authors:  Virginia Cecconi; Monica Moro; Sara Del Mare; Paolo Dellabona; Giulia Casorati
Journal:  Cytometry A       Date:  2008-11       Impact factor: 4.355

Review 3.  Selection of human antibody fragments directed against tumor T-cell epitopes for adoptive T-cell therapy.

Authors:  Ralph Willemsen; Patrick Chames; Erik Schooten; Jan Willem Gratama; Reno Debets
Journal:  Cytometry A       Date:  2008-11       Impact factor: 4.355

4.  FATT-CTL assay for detection of antigen-specific cell-mediated cytotoxicity.

Authors:  Carel A van Baalen; Rob A Gruters; Eufemia G M Berkhoff; Albert D M E Osterhaus; Guus F Rimmelzwaan
Journal:  Cytometry A       Date:  2008-11       Impact factor: 4.355

5.  Curation of complex, context-dependent immunological data.

Authors:  Randi Vita; Kerrie Vaughan; Laura Zarebski; Nima Salimi; Ward Fleri; Howard Grey; Muthu Sathiamurthy; John Mokili; Huynh-Hoa Bui; Philip E Bourne; Julia Ponomarenko; Romulo de Castro; Russell K Chan; John Sidney; Stephen S Wilson; Scott Stewart; Scott Way; Bjoern Peters; Alessandro Sette
Journal:  BMC Bioinformatics       Date:  2006-07-12       Impact factor: 3.169

6.  The immune epitope database and analysis resource: from vision to blueprint.

Authors:  Bjoern Peters; John Sidney; Phil Bourne; Huynh-Hoa Bui; Soeren Buus; Grace Doh; Ward Fleri; Mitch Kronenberg; Ralph Kubo; Ole Lund; David Nemazee; Julia V Ponomarenko; Muthu Sathiamurthy; Stephen Schoenberger; Scott Stewart; Pamela Surko; Scott Way; Steve Wilson; Alessandro Sette
Journal:  PLoS Biol       Date:  2005-03       Impact factor: 8.029

  6 in total
  32 in total

1.  Reproducibility and conflicts in immune epitope data.

Authors:  Randi Vita; Nicole Vasilevsky; Anita Bandrowski; Melissa Haendel; Alessandro Sette; Bjoern Peters
Journal:  Immunology       Date:  2016-02-05       Impact factor: 7.397

Review 2.  Progress on adenovirus-vectored universal influenza vaccines.

Authors:  Kui Xiang; Guan Ying; Zhou Yan; Yan Shanshan; Zhang Lei; Li Hongjun; Sun Maosheng
Journal:  Hum Vaccin Immunother       Date:  2015       Impact factor: 3.452

3.  Evaluation of antigen-specific T-cell responses with a miniaturized and automated method.

Authors:  Giuseppina Li Pira; Federico Ivaldi; Chiara Dentone; Elda Righi; Valerio Del Bono; Claudio Viscoli; Gerrit Koopman; Fabrizio Manca
Journal:  Clin Vaccine Immunol       Date:  2008-10-22

Review 4.  Applications for T-cell epitope queries and tools in the Immune Epitope Database and Analysis Resource.

Authors:  Yohan Kim; Alessandro Sette; Bjoern Peters
Journal:  J Immunol Methods       Date:  2010-10-31       Impact factor: 2.303

5.  A Bioinformatics Practicum to Develop Student Understanding of Immunological Rejection of Protein Drugs.

Authors:  Lauren A O'Donnell; Wilson S Meng; Benjamin J Andrick; Alexa M Borello
Journal:  Am J Pharm Educ       Date:  2016-11-25       Impact factor: 2.047

Review 6.  High throughput T epitope mapping and vaccine development.

Authors:  Giuseppina Li Pira; Federico Ivaldi; Paolo Moretti; Fabrizio Manca
Journal:  J Biomed Biotechnol       Date:  2010-06-15

Review 7.  Design and utilization of epitope-based databases and predictive tools.

Authors:  Nima Salimi; Ward Fleri; Bjoern Peters; Alessandro Sette
Journal:  Immunogenetics       Date:  2010-03-06       Impact factor: 2.846

Review 8.  Benchmarking B-cell epitope prediction for the design of peptide-based vaccines: problems and prospects.

Authors:  Salvador Eugenio C Caoili
Journal:  J Biomed Biotechnol       Date:  2010-03-30

9.  Computer aided selection of candidate vaccine antigens.

Authors:  Darren R Flower; Isabel K Macdonald; Kamna Ramakrishnan; Matthew N Davies; Irini A Doytchinova
Journal:  Immunome Res       Date:  2010-11-03

10.  The immune epitope database 2.0.

Authors:  Randi Vita; Laura Zarebski; Jason A Greenbaum; Hussein Emami; Ilka Hoof; Nima Salimi; Rohini Damle; Alessandro Sette; Bjoern Peters
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971

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