Literature DB >> 18688634

The STR cluster DXS10148-DXS8378-DXS10135 provides a powerful tool for X-chromosomal haplotyping at Xp22.

Tanja Hundertmark1, Sandra Hering, Jeanett Edelmann, Christa Augustin, Ines Plate, Reinhard Szibor.   

Abstract

The evaluation of four pairs of tightly linked chromosome X (ChrX) short tandem repeat (STR)s at Xp22, Xq12, Xq26 and Xq28 led to the creation of the Argus X 8 multiplex amplification kit. These eight STRs are distributed as four closely linked pairs over the entire X-chromosome, and for practical reasons, they are assigned to four linkage groups 1-4. To achieve a further considerable enhancement in discrimination power, we suggest to include additional markers. A recent paper referred to the earlier evaluation of STR clusters at Xq12, Xq26 and Xq28, and here we present the pending data of linkage group 1 at Xp22. The newly established STR updates the Xp22 STR cluster which now presents three polymorphic markers: DXS10148 (PIC = 0.8556), DXS10135 (PIC = 0.9093) and DXS 8378 (PIC = 0.6454). Typing of 398 X-chromosomes provided 278 different and 200 unique haplotypes. All the other haplotypes observed appeared with frequencies in the range between 0.005 and 0.015. Considering this STR triple in the context with the three further triple clusters Xq12, Xq26 and Xq28 published earlier, we announced the development of a next generation of a ChrX STR cluster typing kit.

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Year:  2008        PMID: 18688634     DOI: 10.1007/s00414-008-0277-8

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  16 in total

1.  16 X-chromosome STR loci frequency data from a German population.

Authors:  J Edelman; S Hering; M Michael; R Lessig; D Deischel; G Meier-Sundhausen; L Roewer; I Plate; R Szibor
Journal:  Forensic Sci Int       Date:  2001-12-27       Impact factor: 2.395

2.  Population genetic comparisons of three X-chromosomal STRs.

Authors:  P Wiegand; B Berger; J Edelmann; W Parson
Journal:  Int J Legal Med       Date:  2003-01-24       Impact factor: 2.686

3.  Genetic analysis of 18 X-linked short tandem repeat markers in Korean population.

Authors:  Sang Hee Shin; Jin Seok Yu; Sun Wha Park; Gi Sik Min; Ki Wha Chung
Journal:  Forensic Sci Int       Date:  2005-01-06       Impact factor: 2.395

4.  DXS10079, DXS10074 and DXS10075 are STRs located within a 280-kb region of Xq12 and provide stable haplotypes useful for complex kinship cases.

Authors:  Sandra Hering; Christa Augustin; Jeanett Edelmann; Micaela Heidel; Jan Dressler; Heike Rodig; Eberhard Kuhlisch; Reinhard Szibor
Journal:  Int J Legal Med       Date:  2005-12-13       Impact factor: 2.686

5.  MiniX-STR multiplex system population study in Japan and application to degraded DNA analysis.

Authors:  H Asamura; H Sakai; K Kobayashi; M Ota; H Fukushima
Journal:  Int J Legal Med       Date:  2006-02-11       Impact factor: 2.686

6.  Population genetic evaluation of eight X-chromosomal short tandem repeat loci using Mentype Argus X-8 PCR amplification kit.

Authors:  Dorit Becker; Heike Rodig; Christa Augustin; Jeanett Edelmann; Frank Götz; Sandra Hering; Reinhard Szibor; Werner Brabetz
Journal:  Forensic Sci Int Genet       Date:  2007-09-29       Impact factor: 4.882

7.  Development of two multiplex PCR systems for the analysis of 12 X-chromosomal STR loci in a northwestern Italian population sample.

Authors:  C Robino; A Giolitti; S Gino; C Torre
Journal:  Int J Legal Med       Date:  2006-07-22       Impact factor: 2.686

8.  Hungarian population data of four X-linked markers: DXS8378, DXS7132, HPRTB, and DXS7423.

Authors:  Andrea Zalán; Antónia Völgyi; Martin Jung; Orsolya Peterman; Horolma Pamjav
Journal:  Int J Legal Med       Date:  2005-10-20       Impact factor: 2.686

9.  Hungarian population data of eight X-linked markers in four linkage groups.

Authors:  Andrea Zalán; Antónia Völgyi; Werner Brabetz; Dorit Schleinitz; Horolma Pamjav
Journal:  Forensic Sci Int       Date:  2007-06-22       Impact factor: 2.395

10.  Genetic diversity of 10 X chromosome STRs in northern Portugal.

Authors:  Rui Pereira; Iva Gomes; António Amorim; Leonor Gusmão
Journal:  Int J Legal Med       Date:  2007-01-06       Impact factor: 2.791

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  23 in total

1.  Genetic study of 12 X-STRs in Malay population living in and around Kuala Lumpur using Investigator Argus X-12 kit.

Authors:  Michinaga Samejima; Yasutaka Nakamura; Phrabhakaran Nambiar; Kiyoshi Minaguchi
Journal:  Int J Legal Med       Date:  2012-05-15       Impact factor: 2.686

2.  Population genetic study of four closely-linked X-STR trios in Koreans.

Authors:  Jeong Eun Sim; Hwan Young Lee; Woo Ick Yang; Kyoung-Jin Shin
Journal:  Mol Biol Rep       Date:  2009-08-18       Impact factor: 2.316

3.  X chromosomal recombination--a family study analysing 39 STR markers in German three-generation pedigrees.

Authors:  Sandra Hering; Jeanett Edelmann; Christa Augustin; Eberhard Kuhlisch; Reinhard Szibor
Journal:  Int J Legal Med       Date:  2009-11-20       Impact factor: 2.686

4.  Analysis of 12 X-STRs in Greenlanders, Danes and Somalis using Argus X-12.

Authors:  Carmen Tomas; Vânia Pereira; Niels Morling
Journal:  Int J Legal Med       Date:  2011-09-02       Impact factor: 2.686

5.  Population genetic study of six closely linked groups of X-STRs in a Japanese population.

Authors:  Michinaga Samejima; Yasutaka Nakamura; Kiyoshi Minaguchi
Journal:  Int J Legal Med       Date:  2011-09-15       Impact factor: 2.686

6.  Analysis of 12 X-STR loci in the population of south Croatia.

Authors:  Gordan Mršić; Petar Ozretić; Josip Crnjac; Siniša Merkaš; Ivana Račić; Sara Rožić; Viktorija Sukser; Maja Popović; Marina Korolija
Journal:  Mol Biol Rep       Date:  2017-01-09       Impact factor: 2.316

7.  Forensic characteristics and phylogenetic analyses of the Chinese Yi population via 19 X-chromosomal STR loci.

Authors:  GuangLin He; Ye Li; Xing Zou; Ping Li; PengYu Chen; Feng Song; Tianzhen Gao; Miao Liao; Jing Yan; Jin Wu
Journal:  Int J Legal Med       Date:  2017-02-28       Impact factor: 2.686

8.  Genetic portrait and phylogenetic analysis of an Aksu Uyghur population based on the 19 X-STR system.

Authors:  Ye Li; Jihong Zeng; Yujiang Fan; Guanglin He; Mingkun Xie; Tianzhen Gao; Shouyu Wang; Jin Wu
Journal:  Int J Legal Med       Date:  2018-05-19       Impact factor: 2.686

9.  Analysis of 21 X-chromosome polymorphisms in urban and rural populations in Salta province (north-western Argentina).

Authors:  J F Ferragut; M Bassitta; V Torrens; V Albeza; N Acreche; J A Castro; C Ramon; A Picornell
Journal:  Int J Legal Med       Date:  2018-11-16       Impact factor: 2.686

10.  Analysis of 21 X-chromosomal STRs in an Algerian population sample.

Authors:  Asmahan Bekada; Soraya Benhamamouch; Abdallah Boudjema; Mustapha Fodil; Silvia Menegon; Carlo Torre; Carlo Robino
Journal:  Int J Legal Med       Date:  2009-12-11       Impact factor: 2.686

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