Literature DB >> 18688235

The PSI-MOD community standard for representation of protein modification data.

Luisa Montecchi-Palazzi, Ron Beavis, Pierre-Alain Binz, Robert J Chalkley, John Cottrell, David Creasy, Jim Shofstahl, Sean L Seymour, John S Garavelli.   

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Year:  2008        PMID: 18688235     DOI: 10.1038/nbt0808-864

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


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  77 in total

Review 1.  Post-translational modification of cardiac proteasomes: functional delineation enabled by proteomics.

Authors:  Sarah B Scruggs; Nobel C Zong; Ding Wang; Enrico Stefani; Peipei Ping
Journal:  Am J Physiol Heart Circ Physiol       Date:  2012-04-20       Impact factor: 4.733

2.  Reactome pathway analysis to enrich biological discovery in proteomics data sets.

Authors:  Robin Haw; Henning Hermjakob; Peter D'Eustachio; Lincoln Stein
Journal:  Proteomics       Date:  2011-09       Impact factor: 3.984

Review 3.  Genome and proteome annotation: organization, interpretation and integration.

Authors:  Gabrielle A Reeves; David Talavera; Janet M Thornton
Journal:  J R Soc Interface       Date:  2009-02-06       Impact factor: 4.118

4.  PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping.

Authors:  Luis Francisco Hernández Sánchez; Bram Burger; Carlos Horro; Antonio Fabregat; Stefan Johansson; Pål Rasmus Njølstad; Harald Barsnes; Henning Hermjakob; Marc Vaudel
Journal:  Gigascience       Date:  2019-08-01       Impact factor: 6.524

5.  Tutorial on Protein Ontology Resources.

Authors:  Cecilia N Arighi; Harold Drabkin; Karen R Christie; Karen E Ross; Darren A Natale
Journal:  Methods Mol Biol       Date:  2017

6.  MS-viewer: a web-based spectral viewer for proteomics results.

Authors:  Peter R Baker; Robert J Chalkley
Journal:  Mol Cell Proteomics       Date:  2014-03-03       Impact factor: 5.911

7.  ProForma: A Standard Proteoform Notation.

Authors:  Richard D LeDuc; Veit Schwämmle; Michael R Shortreed; Anthony J Cesnik; Stefan K Solntsev; Jared B Shaw; Maria J Martin; Juan A Vizcaino; Emanuele Alpi; Paul Danis; Neil L Kelleher; Lloyd M Smith; Ying Ge; Jeffrey N Agar; Julia Chamot-Rooke; Joseph A Loo; Ljiljana Pasa-Tolic; Yury O Tsybin
Journal:  J Proteome Res       Date:  2018-02-14       Impact factor: 4.466

8.  The Ontology Lookup Service: bigger and better.

Authors:  Richard Côté; Florian Reisinger; Lennart Martens; Harald Barsnes; Juan Antonio Vizcaino; Henning Hermjakob
Journal:  Nucleic Acids Res       Date:  2010-05-11       Impact factor: 16.971

9.  Ontologies in quantitative biology: a basis for comparison, integration, and discovery.

Authors:  Lars J Jensen; Peer Bork
Journal:  PLoS Biol       Date:  2010-05-25       Impact factor: 8.029

10.  Reactome: a database of reactions, pathways and biological processes.

Authors:  David Croft; Gavin O'Kelly; Guanming Wu; Robin Haw; Marc Gillespie; Lisa Matthews; Michael Caudy; Phani Garapati; Gopal Gopinath; Bijay Jassal; Steven Jupe; Irina Kalatskaya; Shahana Mahajan; Bruce May; Nelson Ndegwa; Esther Schmidt; Veronica Shamovsky; Christina Yung; Ewan Birney; Henning Hermjakob; Peter D'Eustachio; Lincoln Stein
Journal:  Nucleic Acids Res       Date:  2010-11-09       Impact factor: 16.971

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