Literature DB >> 18679813

The chromosomal distribution of histone methylation marks in gymnosperms differs from that of angiosperms.

Jörg Fuchs1, Gabriele Jovtchev, Ingo Schubert.   

Abstract

The chromosomal distribution of seven histone methylation marks (H3K4me2, H3K9me1,2,3 and H3K27me1,2,3) was analysed in the gymnosperm species Pinus sylvestris and Picea abies. Similarly to the situation in other investigated eukaryotes, dimethylation of lysine 4 of histone H3 is restricted to euchromatin in gymnosperms. Surprisingly, also H3K9me1-a mark classified as heterochromatin-specific in angiosperms-labels the euchromatin in P. sylvestris and P. abies. The other investigated methylation marks are either equally distributed along the chromosomes, as H3K9me2 and H3K27me1 (in both species) and H3K9me3 (in P. abies), or enriched at specific types of heterochromatin, as H3K9me3 (in P. sylvestris) and H3K27me2 and H3K27me3 in both species. Although the methylation marks themselves are apparently conserved, their functional specificity within the frame of the 'epigenetic code' might have diverged during evolution.

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Year:  2008        PMID: 18679813     DOI: 10.1007/s10577-008-1252-4

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  32 in total

1.  Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly.

Authors:  J Nakayama ; J C Rice; B D Strahl; C D Allis; S I Grewal
Journal:  Science       Date:  2001-03-15       Impact factor: 47.728

2.  Chromosome identification and comparative karyotypic analyses of four Pinus species.

Authors:  M. Hizume; F. Shibata; Y. Matsusaki; Z. Garajova
Journal:  Theor Appl Genet       Date:  2002-06-20       Impact factor: 5.699

3.  Partitioning and plasticity of repressive histone methylation states in mammalian chromatin.

Authors:  Antoine H F M Peters; Stefan Kubicek; Karl Mechtler; Roderick J O'Sullivan; Alwin A H A Derijck; Laura Perez-Burgos; Alexander Kohlmaier; Susanne Opravil; Makoto Tachibana; Yoichi Shinkai; Joost H A Martens; Thomas Jenuwein
Journal:  Mol Cell       Date:  2003-12       Impact factor: 17.970

4.  Methylation of histone H3 in euchromatin of plant chromosomes depends on basic nuclear DNA content.

Authors:  Andreas Houben; Dmitri Demidov; Dorota Gernand; Armin Meister; Carolyn R Leach; Ingo Schubert
Journal:  Plant J       Date:  2003-03       Impact factor: 6.417

5.  The nucleation and maintenance of heterochromatin by a histone deacetylase in fission yeast.

Authors:  Takatomi Yamada; Wolfgang Fischle; Tomoyasu Sugiyama; C David Allis; Shiv I S Grewal
Journal:  Mol Cell       Date:  2005-10-28       Impact factor: 17.970

Review 6.  Delving into the diversity of facultative heterochromatin: the epigenetics of the inactive X chromosome.

Authors:  Edith Heard
Journal:  Curr Opin Genet Dev       Date:  2005-10       Impact factor: 5.578

7.  B chromosomes of B. dichromosomatica show a reduced level of euchromatic histone H3 methylation marks.

Authors:  Sylvia Marschner; Katrin Kumke; Andreas Houben
Journal:  Chromosome Res       Date:  2007-02-05       Impact factor: 5.239

8.  Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries.

Authors:  C D Allis; S I Grewal
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

9.  Su(var) genes regulate the balance between euchromatin and heterochromatin in Drosophila.

Authors:  Anja Ebert; Gunnar Schotta; Sandro Lein; Stefan Kubicek; Veiko Krauss; Thomas Jenuwein; Gunter Reuter
Journal:  Genes Dev       Date:  2004-12-01       Impact factor: 11.361

10.  Organization and distribution of a Sau3A tandem repeated DNA sequence in Picea (Pinaceae) species.

Authors:  G R Brown; C H Newton; J E Carlson
Journal:  Genome       Date:  1998-08       Impact factor: 2.166

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  16 in total

1.  Holokinetic centromeres and efficient telomere healing enable rapid karyotype evolution.

Authors:  Maja Jankowska; Jörg Fuchs; Evelyn Klocke; Miloslava Fojtová; Pavla Polanská; Jiří Fajkus; Veit Schubert; Andreas Houben
Journal:  Chromosoma       Date:  2015-06-11       Impact factor: 4.316

2.  Immuno-cytogenetic manifestation of epigenetic chromatin modification marks in plants.

Authors:  Santosh Kumar Sharma; Maki Yamamoto; Yasuhiko Mukai
Journal:  Planta       Date:  2014-12-25       Impact factor: 4.116

Review 3.  H3K27me1 is E(z) in animals, but not in plants.

Authors:  Yannick Jacob; Scott D Michaels
Journal:  Epigenetics       Date:  2009-08-03       Impact factor: 4.528

4.  A second generation framework for the analysis of microsatellites in expressed sequence tags and the development of EST-SSR markers for a conifer, Cryptomeria japonica.

Authors:  Saneyoshi Ueno; Yoshinari Moriguchi; Kentaro Uchiyama; Tokuko Ujino-Ihara; Norihiro Futamura; Tetsuya Sakurai; Kenji Shinohara; Yoshihiko Tsumura
Journal:  BMC Genomics       Date:  2012-04-16       Impact factor: 3.969

5.  Evolutionary history of LTR retrotransposon chromodomains in plants.

Authors:  Anton Novikov; Georgiy Smyshlyaev; Olga Novikova
Journal:  Int J Plant Genomics       Date:  2012-04-29

Review 6.  Chromatin dynamics during cellular differentiation in the female reproductive lineage of flowering plants.

Authors:  Célia Baroux; Daphné Autran
Journal:  Plant J       Date:  2015-07       Impact factor: 6.417

7.  ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing.

Authors:  Yannick Jacob; Suhua Feng; Chantal A LeBlanc; Yana V Bernatavichute; Hume Stroud; Shawn Cokus; Lianna M Johnson; Matteo Pellegrini; Steven E Jacobsen; Scott D Michaels
Journal:  Nat Struct Mol Biol       Date:  2009-06-07       Impact factor: 15.369

8.  Evolution of genome size and complexity in Pinus.

Authors:  Alison M Morse; Daniel G Peterson; M Nurul Islam-Faridi; Katherine E Smith; Zenaida Magbanua; Saul A Garcia; Thomas L Kubisiak; Henry V Amerson; John E Carlson; C Dana Nelson; John M Davis
Journal:  PLoS One       Date:  2009-02-05       Impact factor: 3.240

9.  Chromatin organization and cytological features of carnivorous Genlisea species with large genome size differences.

Authors:  Trung D Tran; Hieu X Cao; Gabriele Jovtchev; Petr Novák; Giang T H Vu; Jiří Macas; Ingo Schubert; Joerg Fuchs
Journal:  Front Plant Sci       Date:  2015-08-20       Impact factor: 5.753

10.  Sequencing and assembly of the 22-gb loblolly pine genome.

Authors:  Aleksey Zimin; Kristian A Stevens; Marc W Crepeau; Ann Holtz-Morris; Maxim Koriabine; Guillaume Marçais; Daniela Puiu; Michael Roberts; Jill L Wegrzyn; Pieter J de Jong; David B Neale; Steven L Salzberg; James A Yorke; Charles H Langley
Journal:  Genetics       Date:  2014-03       Impact factor: 4.562

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