Literature DB >> 18678943

Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of chlorite dismutase: a detoxifying enzyme producing molecular oxygen.

Daniël C de Geus1, Ellen A J Thomassen, Clarisse L van der Feltz, Jan Pieter Abrahams.   

Abstract

Chlorite dismutase, a homotetrameric haem-based protein, is one of the key enzymes of (per)chlorate-reducing bacteria. It is highly active (>2 kU mg(-1)) in reducing the toxic compound chlorite to the innocuous chloride anion and molecular oxygen. Chlorite itself is produced as the intermediate product of (per)chlorate reduction. The chlorite dismutase gene in Azospira oryzae strain GR-1 employing degenerate primers has been identified and the active enzyme was subsequently overexpressed in Escherichia coli. Chlorite dismutase was purified, proven to be active and crystallized using sitting drops with PEG 2000 MME, KSCN and ammonium sulfate as precipitants. The crystals belonged to space group P2(1)2(1)2 and were most likely to contain six subunits in the asymmetric unit. The refined unit-cell parameters were a = 164.46, b = 169.34, c = 60.79 A. The crystals diffracted X-rays to 2.1 A resolution on a synchrotron-radiation source and a three-wavelength MAD data set has been collected. Determination of the chlorite dismutase structure will provide insights into the active site of the enzyme, for which no structures are currently available.

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Year:  2008        PMID: 18678943      PMCID: PMC2494964          DOI: 10.1107/S1744309108020551

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  10 in total

1.  Myoglobin-like aerotaxis transducers in Archaea and Bacteria.

Authors:  S Hou; R W Larsen; D Boudko; C W Riley; E Karatan; M Zimmer; G W Ordal; M Alam
Journal:  Nature       Date:  2000-02-03       Impact factor: 49.962

2.  Purification and characterization of (per)chlorate reductase from the chlorate-respiring strain GR-1.

Authors:  S W Kengen; G B Rikken; W R Hagen; C G van Ginkel; A J Stams
Journal:  J Bacteriol       Date:  1999-11       Impact factor: 3.490

3.  Integration of macromolecular diffraction data.

Authors:  A G Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-10

4.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

5.  Purification and characterization of chlorite dismutase: a novel oxygen-generating enzyme.

Authors:  C G van Ginkel; G B Rikken; A G Kroon; S W Kengen
Journal:  Arch Microbiol       Date:  1996-11       Impact factor: 2.552

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  Dechloromonas hortensis sp. nov. and strain ASK-1, two novel (per)chlorate-reducing bacteria, and taxonomic description of strain GR-1.

Authors:  Arthur Wolterink; Sungyoun Kim; Margje Muusse; In S Kim; Paul J M Roholl; Cees G van Ginkel; Alfons J M Stams; Servé W M Kengen
Journal:  Int J Syst Evol Microbiol       Date:  2005-09       Impact factor: 2.747

Review 8.  Oxygen-binding haem proteins.

Authors:  Michael T Wilson; Brandon J Reeder
Journal:  Exp Physiol       Date:  2007-11-02       Impact factor: 2.969

9.  Spectroscopic characterization and ligand-binding properties of chlorite dismutase from the chlorate respiring bacterial strain GR-1.

Authors:  Peter L Hagedoorn; Daniel C De Geus; Wilfred R Hagen
Journal:  Eur J Biochem       Date:  2002-10

Review 10.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14
  10 in total
  2 in total

Review 1.  Understanding molecular enzymology of porphyrin-binding α + β barrel proteins - One fold, multiple functions.

Authors:  Stefan Hofbauer; Vera Pfanzagl; Hanna Michlits; Daniel Schmidt; Christian Obinger; Paul G Furtmüller
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2020-09-04       Impact factor: 3.036

2.  A traffic light enzyme: acetate binding reversibly switches chlorite dismutase from a red- to a green-colored heme protein.

Authors:  Durga Mahor; Julia Püschmann; Menno van den Haak; Pepijn J Kooij; David L J van den Ouden; Marc J F Strampraad; Batoul Srour; Peter-Leon Hagedoorn
Journal:  J Biol Inorg Chem       Date:  2020-04-03       Impact factor: 3.358

  2 in total

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