Literature DB >> 18678600

Dynamic variation in allele-specific gene expression of Paraoxonase-1 in murine and human tissues.

Layla Parker-Katiraee1, Eleni Bousiaki, David Monk, Gudrun E Moore, Kazuhiko Nakabayashi, Stephen W Scherer.   

Abstract

Differential allelic expression has been shown to be common in mice, humans and maize, and variability in the expression of polymorphic alleles has been associated with human disease. Here, we describe the differential expression pattern of Paraoxonase-1, a gene involved in lipid metabolism and implicated in the formation of atherosclerotic lesions. We measured the expression of the murine Paraoxonase-1 gene (Pon1) in livers at different stages of embryonic development using F1 hybrid crosses and quantified the transcriptional level of both parental alleles. Using human foetal tissues, we analysed the expression of the human orthologue (PON1) and found monoallelic or preferential allelic expression in 6/7 and 4/4 samples from liver and pancreas, respectively. We observed that Pon1 does not show a parent-of-origin preference in its allelic expression, but has dramatic variations in allele-specific expression occurring throughout development. This study has important repercussions in the analysis of haplotypes at disease loci, since it implies that the expression of polymorphic alleles can be unequal and dynamic.

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Year:  2008        PMID: 18678600      PMCID: PMC2566522          DOI: 10.1093/hmg/ddn222

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  39 in total

Review 1.  Genomic imprinting: intricacies of epigenetic regulation in clusters.

Authors:  Raluca I Verona; Mellissa R W Mann; Marisa S Bartolomei
Journal:  Annu Rev Cell Dev Biol       Date:  2003       Impact factor: 13.827

2.  Allelic variation in gene expression is common in the human genome.

Authors:  H Shuen Lo; Zhining Wang; Ying Hu; Howard H Yang; Sheryl Gere; Kenneth H Buetow; Maxwell P Lee
Journal:  Genome Res       Date:  2003-08       Impact factor: 9.043

3.  A survey of genetic and epigenetic variation affecting human gene expression.

Authors:  Tomi Pastinen; Robert Sladek; Scott Gurd; Alya'a Sammak; Bing Ge; Pierre Lepage; Karine Lavergne; Amelie Villeneuve; Tiffany Gaudin; Helena Brändström; Allon Beck; Andrei Verner; Jade Kingsley; Eef Harmsen; Damian Labuda; Kenneth Morgan; Marie-Claude Vohl; Anna K Naumova; Daniel Sinnett; Thomas J Hudson
Journal:  Physiol Genomics       Date:  2004-01-15       Impact factor: 3.107

Review 4.  The potential role of gene duplications in the evolution of imprinting mechanisms.

Authors:  Jorn Walter; Martina Paulsen
Journal:  Hum Mol Genet       Date:  2003-08-27       Impact factor: 6.150

5.  Identification of a large novel imprinted gene cluster on mouse proximal chromosome 6.

Authors:  Ryuichi Ono; Hirosuke Shiura; Hiroyuki Aburatani; Takashi Kohda; Tomoko Kaneko-Ishino; Fumitoshi Ishino
Journal:  Genome Res       Date:  2003-07       Impact factor: 9.043

6.  Characterization of a common susceptibility locus for asthma-related traits.

Authors:  Tarja Laitinen; Anne Polvi; Pia Rydman; Johanna Vendelin; Ville Pulkkinen; Paula Salmikangas; Siru Mäkelä; Marko Rehn; Asta Pirskanen; Anna Rautanen; Marco Zucchelli; Harriet Gullstén; Marina Leino; Harri Alenius; Tuula Petäys; Tari Haahtela; Annika Laitinen; Catherine Laprise; Thomas J Hudson; Lauri A Laitinen; Juha Kere
Journal:  Science       Date:  2004-04-09       Impact factor: 47.728

7.  An upstream polymorphism associated with lactase persistence has increased enhancer activity.

Authors:  Jesper T Troelsen; Jørgen Olsen; Jette Møller; Hans Sjöström
Journal:  Gastroenterology       Date:  2003-12       Impact factor: 22.682

8.  Allele-specific repression of lymphotoxin-alpha by activated B cell factor-1.

Authors:  Julian C Knight; Brendan J Keating; Dominic P Kwiatkowski
Journal:  Nat Genet       Date:  2004-03-28       Impact factor: 38.330

9.  Allele-specific differential expression of a common adiponectin gene polymorphism related to obesity.

Authors:  Wei-Shiung Yang; Pei-Ling Tsou; Wei-Jei Lee; Da-Lun Tseng; Chi-Ling Chen; Chi-Chung Peng; Kuan-Ching Lee; Mei-Ju Chen; Chang-Jen Huang; Tong-Yuan Tai; Lee-Ming Chuang
Journal:  J Mol Med (Berl)       Date:  2003-05-16       Impact factor: 4.599

10.  Evolutionary changes in cis and trans gene regulation.

Authors:  Patricia J Wittkopp; Belinda K Haerum; Andrew G Clark
Journal:  Nature       Date:  2004-07-01       Impact factor: 49.962

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  8 in total

Review 1.  Human paraoxonase-1 (PON1): Gene structure and expression, promiscuous activities and multiple physiological roles.

Authors:  Mike Mackness; Bharti Mackness
Journal:  Gene       Date:  2015-05-09       Impact factor: 3.688

2.  Evidence of expression variation and allelic imbalance in Crohn's disease susceptibility genes NOD2 and ATG16L1 in human dendritic cells.

Authors:  Jianzhong Hu; Inga Peter
Journal:  Gene       Date:  2013-07-10       Impact factor: 3.688

3.  A diet rich in olive oil phenolics reduces oxidative stress in the heart of SAMP8 mice by induction of Nrf2-dependent gene expression.

Authors:  Banu Bayram; Beraat Ozcelik; Stefanie Grimm; Thomas Roeder; Charlotte Schrader; Insa M A Ernst; Anika E Wagner; Tilman Grune; Jan Frank; Gerald Rimbach
Journal:  Rejuvenation Res       Date:  2012-01-11       Impact factor: 4.663

Review 4.  Paraoxonase 1 (PON1) as a genetic determinant of susceptibility to organophosphate toxicity.

Authors:  Lucio G Costa; Gennaro Giordano; Toby B Cole; Judit Marsillach; Clement E Furlong
Journal:  Toxicology       Date:  2012-07-31       Impact factor: 4.221

5.  Comparing methods for mapping cis acting polymorphisms using allelic expression ratios.

Authors:  Marion Dawn Teare; Suteeraporn Pinyakorn; James Heighway; Mauro F Santibanez Koref
Journal:  PLoS One       Date:  2011-12-13       Impact factor: 3.240

6.  Developmental changes in PON1 enzyme activity in young children and effects of PON1 polymorphisms.

Authors:  Karen Huen; Kim Harley; Jordan Brooks; Alan Hubbard; Asa Bradman; Brenda Eskenazi; Nina Holland
Journal:  Environ Health Perspect       Date:  2009-06-09       Impact factor: 9.031

7.  Divergence of mammalian higher order chromatin structure is associated with developmental loci.

Authors:  Emily V Chambers; Wendy A Bickmore; Colin A Semple
Journal:  PLoS Comput Biol       Date:  2013-04-04       Impact factor: 4.475

8.  Differentially methylated regions in maternal and paternal uniparental disomy for chromosome 7.

Authors:  Katariina Hannula-Jouppi; Mari Muurinen; Marita Lipsanen-Nyman; Lovisa E Reinius; Sini Ezer; Dario Greco; Juha Kere
Journal:  Epigenetics       Date:  2013-11-18       Impact factor: 4.528

  8 in total

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