Literature DB >> 18678590

Phylocom: software for the analysis of phylogenetic community structure and trait evolution.

Campbell O Webb1, David D Ackerly, Steven W Kembel.   

Abstract

MOTIVATION: The increasing availability of phylogenetic and trait data for communities of co-occurring species has created a need for software that integrates ecological and evolutionary analyses. Capabilities: Phylocom calculates numerous metrics of phylogenetic community structure and trait similarity within communities. Hypothesis testing is implemented using several null models. Within the same framework, it measures phylogenetic signal and correlated evolution for species traits. A range of utility functions allow community and phylogenetic data manipulation, tree and trait generation, and integration into scientific workflows. AVAILABILITY: Open source at: http://phylodiversity.net/phylocom/.

Mesh：

Year:  2008        PMID： 18678590     DOI： 10.1093/bioinformatics/btn358

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  363 in total

1.  Phylogenetic relatedness as a tool in restoration ecology: a meta-analysis.

Authors:  Miguel Verdú; Lorena Gómez-Aparicio; Alfonso Valiente-Banuet
Journal:  Proc Biol Sci       Date:  2011-12-07       Impact factor: 5.349

2.  Relevance of evolutionary history for food web structure.

Authors:  Anna Eklöf; Matthew R Helmus; M Moore; Stefano Allesina
Journal:  Proc Biol Sci       Date:  2011-11-16       Impact factor: 5.349

3.  Genome size and DNA base composition of geophytes: the mirror of phenology and ecology?

Authors:  Pavel Veselý; Petr Bures; Petr Smarda; Tomás Pavlícek
Journal:  Ann Bot       Date:  2011-10-21       Impact factor: 4.357

4.  Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes.

Authors:  Kristen M DeAngelis; Mary K Firestone
Journal:  Appl Environ Microbiol       Date:  2012-01-27       Impact factor: 4.792

5.  Phylogenetic analysis suggests that habitat filtering is structuring marine bacterial communities across the globe.

Authors:  Mikael Pontarp; Björn Canbäck; Anders Tunlid; Per Lundberg
Journal:  Microb Ecol       Date:  2012-07       Impact factor: 4.552

6.  Computing diversity from dated phylogenies and taxonomic hierarchies: does it make a difference to the conclusions?

Authors:  Carlo Ricotta; Giovanni Bacaro; Michela Marignani; Sandrine Godefroid; Stefano Mazzoleni
Journal:  Oecologia       Date:  2012-04-17       Impact factor: 3.225

7.  Packing a pinch: functional implications of chela shapes in scorpions using finite element analysis.

Authors:  Arie van der Meijden; Thomas Kleinteich; Pedro Coelho
Journal:  J Anat       Date:  2012-02-23       Impact factor: 2.610

8.  Relationship between leaf traits and fire-response strategies in shrub species of a mountainous region of south-eastern Australia.

Authors:  Lyndsey M Vivian; Geoffrey J Cary
Journal:  Ann Bot       Date:  2011-10-12       Impact factor: 4.357

9.  Distinctive phyllosphere bacterial communities in tropical trees.

Authors:  Mincheol Kim; Dharmesh Singh; Ang Lai-Hoe; Rusea Go; Raha Abdul Rahim; A N Ainuddin; Jongsik Chun; Jonathan M Adams
Journal:  Microb Ecol       Date:  2011-10-12       Impact factor: 4.552

10.  The importance of phylogeny to the study of phenological response to global climate change.

Authors:  Charles C Davis; Charles G Willis; Richard B Primack; Abraham J Miller-Rushing
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-10-12       Impact factor: 6.237
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