Literature DB >> 18675489

Low duplicability and network fragility of cancer genes.

Davide Rambaldi1, Federico M Giorgi, Fabrizio Capuani, Andrea Ciliberto, Francesca D Ciccarelli.   

Abstract

We identified genomic and network properties of approximately 600 genes mutated in different cancer types. These genes tend not to duplicate but, unlike most human singletons, they encode central hubs of highly interconnected modules within the protein-protein interaction network (PIN). We find that cancer genes are fragile components of the human gene repertoire, sensitive to dosage modification. Furthermore, other nodes of the human PIN with similar properties are rare and probably enriched in candidate cancer genes.

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Year:  2008        PMID: 18675489     DOI: 10.1016/j.tig.2008.06.003

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  32 in total

1.  Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms.

Authors:  Zhen Li; Jonas Defoort; Setareh Tasdighian; Steven Maere; Yves Van de Peer; Riet De Smet
Journal:  Plant Cell       Date:  2016-01-07       Impact factor: 11.277

Review 2.  Evolution of biomolecular networks: lessons from metabolic and protein interactions.

Authors:  Takuji Yamada; Peer Bork
Journal:  Nat Rev Mol Cell Biol       Date:  2009-11       Impact factor: 94.444

3.  Cancer develops, progresses and responds to therapies through restricted perturbation of the protein-protein interaction network.

Authors:  Jordi Serra-Musach; Helena Aguilar; Francesco Iorio; Francesc Comellas; Antoni Berenguer; Joan Brunet; Julio Saez-Rodriguez; Miguel Angel Pujana
Journal:  Integr Biol (Camb)       Date:  2012-07-18       Impact factor: 2.192

4.  A human functional protein interaction network and its application to cancer data analysis.

Authors:  Guanming Wu; Xin Feng; Lincoln Stein
Journal:  Genome Biol       Date:  2010-05-19       Impact factor: 13.583

5.  Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa.

Authors:  Tomislav Domazet-Loso; Diethard Tautz
Journal:  BMC Biol       Date:  2010-05-21       Impact factor: 7.431

6.  The (r)evolution of cancer genetics.

Authors:  Francesca D Ciccarelli
Journal:  BMC Biol       Date:  2010-06-11       Impact factor: 7.431

7.  Duplicability of self-interacting human genes.

Authors:  Asa Pérez-Bercoff; Takashi Makino; Aoife McLysaght
Journal:  BMC Evol Biol       Date:  2010-05-28       Impact factor: 3.260

8.  Extracting consistent knowledge from highly inconsistent cancer gene data sources.

Authors:  Xue Gong; Ruihong Wu; Yuannv Zhang; Wenyuan Zhao; Lixin Cheng; Yunyan Gu; Lin Zhang; Jing Wang; Jing Zhu; Zheng Guo
Journal:  BMC Bioinformatics       Date:  2010-02-05       Impact factor: 3.169

9.  Modification of gene duplicability during the evolution of protein interaction network.

Authors:  Matteo D'Antonio; Francesca D Ciccarelli
Journal:  PLoS Comput Biol       Date:  2011-04-07       Impact factor: 4.475

10.  Network of Cancer Genes: a web resource to analyze duplicability, orthology and network properties of cancer genes.

Authors:  Adnan S Syed; Matteo D'Antonio; Francesca D Ciccarelli
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971

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