Literature DB >> 18674559

Evaluation of neurite outgrowth anisotropy using a novel application of circular analysis.

Grace NgaYin Li1, Diane Hoffman-Kim.   

Abstract

Precise axon growth is required for making proper connections in development and after injury. One method of studying axon guidance and growth is through in vitro outgrowth assays that present controlled microenvironments. In this study, we applied circular statistical methods to evaluate directional neurite response. Visualization of data on a circular scale allows more accurate representation of the data, as neurite angles are inherently expressed on a circle. Here, the direction of neurite outgrowth from dorsal root ganglia derived neurons on different substrate types was quantitatively measured. Further, simulations of datasets with known circular parameters reflecting expected neurite angle distributions from different substrate types were also generated. Circular statistical methods were utilized and compared to linear statistical models widely used in the neuroscience literature. For small samples, Rao's spacing test showed the smallest occurrence of Type I errors (false positives) when tested against simulated uniform distributions. V-test and Rayleigh's test showed highest statistical power when tested against a unimodal distribution with known and unknown mean direction, respectively. For bimodal samples, Watson's U(2)-test showed the highest statistical power. Overall, circular statistical uniformity tests showed higher statistical power than linear non-parametric tests, particularly for small samples (n=5). Circular analysis methods represent a useful tool for evaluation of directionality of neurite outgrowth with applications including: (1) assessment of neurite outgrowth potential; (2) determination of isotropy of cellular responses to single and multiple cues and (3) determination of the relative strengths of cues present in a complex environment.

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Mesh:

Year:  2008        PMID: 18674559      PMCID: PMC2587349          DOI: 10.1016/j.jneumeth.2008.07.001

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  40 in total

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Authors:  M Y Macias; J H Battocletti; C H Sutton; F A Pintar; D J Maiman
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2.  Distinguishing between directional guidance and motility regulation in neuronal migration.

Authors:  Michael Ward; Corey McCann; Michael DeWulf; Jane Y Wu; Yi Rao
Journal:  J Neurosci       Date:  2003-06-15       Impact factor: 6.167

3.  Axonal mitochondrial transport and potential are correlated.

Authors:  Kyle E Miller; Michael P Sheetz
Journal:  J Cell Sci       Date:  2004-05-18       Impact factor: 5.285

4.  Alignment of glial cells stimulates directional neurite growth of CNS neurons in vitro.

Authors:  R Deumens; G C Koopmans; C G J Den Bakker; V Maquet; S Blacher; W M M Honig; R Jérôme; J-P Pirard; H W M Steinbusch; E A J Joosten
Journal:  Neuroscience       Date:  2004       Impact factor: 3.590

5.  A rapid method for semi-quantitative analysis of neurite outgrowth from chick DRG explants using image analysis.

Authors:  J Bilsland; M Rigby; L Young; S Harper
Journal:  J Neurosci Methods       Date:  1999-10-15       Impact factor: 2.390

6.  Directional neurite outgrowth is enhanced by engineered meningeal cell-coated substrates.

Authors:  Jennifer F Walsh; Michael E Manwaring; Patrick A Tresco
Journal:  Tissue Eng       Date:  2005 Jul-Aug

7.  Adult rat olfactory nerve ensheathing cells are effective promoters of adult central nervous system neurite outgrowth in coculture.

Authors:  R J Sonigra; P C Brighton; J Jacoby; S Hall; C B Wigley
Journal:  Glia       Date:  1999-02-01       Impact factor: 7.452

8.  Measurement of cell migration in response to an evolving radial chemokine gradient triggered by a microvalve.

Authors:  Charles W Frevert; Gregory Boggy; Thomas M Keenan; Albert Folch
Journal:  Lab Chip       Date:  2006-05-12       Impact factor: 6.799

Review 9.  Regional differences in glial-derived factors that promote dendritic outgrowth from mouse cortical neurons in vitro.

Authors:  P D Le Roux; T A Reh
Journal:  J Neurosci       Date:  1994-08       Impact factor: 6.167

10.  Membrane-associated molecules guide limbic and nonlimbic thalamocortical projections.

Authors:  F Mann; V Zhukareva; A Pimenta; P Levitt; J Bolz
Journal:  J Neurosci       Date:  1998-11-15       Impact factor: 6.167

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  9 in total

1.  Neurite outgrowth at the biomimetic interface.

Authors:  Celinda M Kofron; Yu-Ting Liu; Cristina Y López-Fagundo; Jennifer A Mitchel; Diane Hoffman-Kim
Journal:  Ann Biomed Eng       Date:  2010-05-04       Impact factor: 3.934

2.  Wrinkled, wavelength-tunable graphene-based surface topographies for directing cell alignment and morphology.

Authors:  Zhongying Wang; Daniel Tonderys; Susan E Leggett; Evelyn Kendall Williams; Mehrdad T Kiani; Ruben Spitz Steinberg; Yang Qiu; Ian Y Wong; Robert H Hurt
Journal:  Carbon N Y       Date:  2016-02-01       Impact factor: 9.594

3.  Optimization by Response Surface Methodology of Confluent and Aligned Cellular Monolayers for Nerve Guidance.

Authors:  Celinda M Kofron; Diane Hoffman-Kim
Journal:  Cell Mol Bioeng       Date:  2009-12       Impact factor: 2.321

Review 4.  Topography, cell response, and nerve regeneration.

Authors:  Diane Hoffman-Kim; Jennifer A Mitchel; Ravi V Bellamkonda
Journal:  Annu Rev Biomed Eng       Date:  2010-08-15       Impact factor: 9.590

5.  It is all about the support - The role of the extracellular matrix in regenerating axon guidance.

Authors:  Lea Roumazeilles; Nikolaos Dokalis; Eva Kaulich; Vincent Lelievre
Journal:  Cell Adh Migr       Date:  2018-01-29       Impact factor: 3.405

6.  Quantifying cellular alignment on anisotropic biomaterial platforms.

Authors:  Alexander R Nectow; Misha E Kilmer; David L Kaplan
Journal:  J Biomed Mater Res A       Date:  2013-05-18       Impact factor: 4.396

7.  The lh3 Glycosyltransferase Directs Target-Selective Peripheral Nerve Regeneration.

Authors:  Jesse Isaacman-Beck; Valerie Schneider; Clara Franzini-Armstrong; Michael Granato
Journal:  Neuron       Date:  2015-11-05       Impact factor: 17.173

8.  Sequential Retraction Segregates SGN Processes during Target Selection in the Cochlea.

Authors:  Noah R Druckenbrod; Lisa V Goodrich
Journal:  J Neurosci       Date:  2015-12-09       Impact factor: 6.167

9.  Uniaxially crumpled graphene as a platform for guided myotube formation.

Authors:  Junghoon Kim; Juyoung Leem; Hong Nam Kim; Pilgyu Kang; Jonghyun Choi; Md Farhadul Haque; Daeshik Kang; SungWoo Nam
Journal:  Microsyst Nanoeng       Date:  2019-11-04       Impact factor: 7.127

  9 in total

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