Literature DB >> 18672899

Explaining an unusually fast parasitic enzyme: folate tail-binding residues dictate substrate positioning and catalysis in Cryptosporidium hominis thymidylate synthase.

W Edward Martucci1, Melissa A Vargo, Karen S Anderson.   

Abstract

The essential enzyme TS-DHFR from Cryptosporidium hominis undergoes an unusually rapid rate of catalysis at the conserved TS domain, facilitated by two nonconserved residues, Ala287 and Ser290, in the folate tail-binding region. Mutation of these two residues to their conserved counterparts drastically affects multiple steps of the TS catalytic cycle. We have determined the crystal structures of all three mutants (A287F, S290G, and A287F/S290G) in complex with active site ligands dUMP and CB3717. The structural data show two effects of the mutations: an increased distance between the ligands in the active site and increased flexibility of the folate ligand in the partially open enzyme state that precedes conformational change to the active catalytic state. The latter effect is able to be rescued by the mutants containing the A287F mutation. In addition, the conserved water network of TS is altered in each of the mutants. The structural results point to a role of the folate tail-binding residues in closely positioning ChTS ligands and restricting ligand flexibility in the partially open state to allow for a rapid transition to the active closed state and enhanced rate of catalysis. These results provide an explanation on how folate tail-binding residues at one end of the active site affect long-range interactions throughout the TS active site and validate these residues as targets for species-specific drug design.

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Year:  2008        PMID: 18672899      PMCID: PMC2613286          DOI: 10.1021/bi800466z

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  36 in total

1.  Pairwise specificity and sequential binding in enzyme catalysis: thymidylate synthase.

Authors:  J S Finer-Moore; W R Montfort; R M Stroud
Journal:  Biochemistry       Date:  1990-07-31       Impact factor: 3.162

2.  Crystal structure of Escherichia coli thymidylate synthase containing bound 5-fluoro-2'-deoxyuridylate and 10-propargyl-5,8-dideazafolate.

Authors:  D A Matthews; K Appelt; S J Oatley; N H Xuong
Journal:  J Mol Biol       Date:  1990-08-20       Impact factor: 5.469

3.  A binding mechanism in protein-nucleotide interactions: implication for U1A RNA binding.

Authors:  Victor Guallar; Kenneth W Borrelli
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-07       Impact factor: 11.205

4.  Crystal structures of rat thymidylate synthase inhibited by Tomudex, a potent anticancer drug.

Authors:  R R Sotelo-Mundo; J Ciesla; J M Dzik; W Rode; F Maley; G F Maley; L W Hardy; W R Montfort
Journal:  Biochemistry       Date:  1999-01-19       Impact factor: 3.162

5.  The additivity of substrate fragments in enzyme-ligand binding.

Authors:  T J Stout; C R Sage; R M Stroud
Journal:  Structure       Date:  1998-07-15       Impact factor: 5.006

6.  Mechanism of interaction of thymidylate synthetase with 5-fluorodeoxyuridylate.

Authors:  D V Santi; C S McHenry; H Sommer
Journal:  Biochemistry       Date:  1974-01-29       Impact factor: 3.162

7.  The structural mechanism for half-the-sites reactivity in an enzyme, thymidylate synthase, involves a relay of changes between subunits.

Authors:  A C Anderson; R H O'Neil; W L DeLano; R M Stroud
Journal:  Biochemistry       Date:  1999-10-19       Impact factor: 3.162

8.  Phylogenetic classification of protozoa based on the structure of the linker domain in the bifunctional enzyme, dihydrofolate reductase-thymidylate synthase.

Authors:  Robert H O'Neil; Ryan H Lilien; Bruce R Donald; Robert M Stroud; Amy C Anderson
Journal:  J Biol Chem       Date:  2003-10-09       Impact factor: 5.157

9.  Cofactor triggers the conformational change in thymidylate synthase: implications for an ordered binding mechanism.

Authors:  A Kamb; J S Finer-Moore; R M Stroud
Journal:  Biochemistry       Date:  1992-12-29       Impact factor: 3.162

10.  The separate effects of E60Q in Lactobacillus casei thymidylate synthase delineate between mechanisms for formation of intermediates in catalysis.

Authors:  D L Birdsall; W Huang; D V Santi; R M Stroud; J Finer-Moore
Journal:  Protein Eng       Date:  1998-03
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  7 in total

1.  Understanding the structural basis of species selective, stereospecific inhibition for Cryptosporidium and human thymidylate synthase.

Authors:  Daniel J Czyzyk; Margarita Valhondo; William L Jorgensen; Karen S Anderson
Journal:  FEBS Lett       Date:  2019-06-18       Impact factor: 4.124

2.  Structural studies provide clues for analog design of specific inhibitors of Cryptosporidium hominis thymidylate synthase-dihydrofolate reductase.

Authors:  Vidya P Kumar; Jose A Cisneros; Kathleen M Frey; Alejandro Castellanos-Gonzalez; Yiqiang Wang; Aleem Gangjee; A Clinton White; William L Jorgensen; Karen S Anderson
Journal:  Bioorg Med Chem Lett       Date:  2014-07-24       Impact factor: 2.823

3.  First three-dimensional structure of Toxoplasma gondii thymidylate synthase-dihydrofolate reductase: insights for catalysis, interdomain interactions, and substrate channeling.

Authors:  Hitesh Sharma; Mark J Landau; Melissa A Vargo; Krasimir A Spasov; Karen S Anderson
Journal:  Biochemistry       Date:  2013-10-03       Impact factor: 3.162

4.  Exploring novel strategies for AIDS protozoal pathogens: α-helix mimetics targeting a key allosteric protein-protein interaction in C. hominis TS-DHFR.

Authors:  W Edward Martucci; Johanna M Rodriguez; Melissa A Vargo; Matthew Marr; Andrew D Hamilton; Karen S Anderson
Journal:  Medchemcomm       Date:  2013-09       Impact factor: 3.597

5.  Mg2+ binds to the surface of thymidylate synthase and affects hydride transfer at the interior active site.

Authors:  Zhen Wang; Paul J Sapienza; Thelma Abeysinghe; Calvin Luzum; Andrew L Lee; Janet S Finer-Moore; Robert M Stroud; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2013-05-10       Impact factor: 15.419

Review 6.  Cryptosporidium: genomic and biochemical features.

Authors:  Stanley Dean Rider; Guan Zhu
Journal:  Exp Parasitol       Date:  2008-12-31       Impact factor: 2.011

7.  Structure activity relationship towards design of cryptosporidium specific thymidylate synthase inhibitors.

Authors:  D J Czyzyk; M Valhondo; L Deiana; J Tirado-Rives; W L Jorgensen; K S Anderson
Journal:  Eur J Med Chem       Date:  2019-09-04       Impact factor: 6.514

  7 in total

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