Literature DB >> 18671230

Automated white-matter tractography using a probabilistic diffusion tensor atlas: Application to temporal lobe epilepsy.

Donald J Hagler1, Mazyar E Ahmadi, Joshua Kuperman, Dominic Holland, Carrie R McDonald, Eric Halgren, Anders M Dale.   

Abstract

Diffusion-weighted magnetic resonance imaging allows researchers and clinicians to identify individual white matter fiber tracts and map their trajectories. The reliability and interpretability of fiber-tracking procedures is improved when a priori anatomical information is used as a guide. We have developed an automated method for labeling white matter fiber tracts in individual subjects based on a probabilistic atlas of fiber tract locations and orientations. The probabilistic fiber atlas contains 23 fiber tracts and was constructed by manually identifying fiber tracts in 21 healthy controls and 21 patients with temporal lobe epilepsy (TLE). The manual tract identification method required approximately 40 h of manual editing by a trained image analyst using multiple regions of interest to select or exclude streamline fibers. Identification of fiber tracts with the atlas does not require human intervention, but nonetheless benefits from the a priori anatomical information that was used to manually identify the tracts included in the atlas. We applied this method to compare fractional anisotropy--thought to be a measure of white matter integrity--in individual fiber tracts between control subjects and patients with TLE. We found that the atlas-based and manual fiber selection methods produced a similar pattern of results. However, the between-group effect sizes using the atlas-derived fibers were generally as large or larger than those obtained with manually selected fiber tracks. (c) 2008 Wiley-Liss, Inc.

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Year:  2009        PMID: 18671230      PMCID: PMC2754725          DOI: 10.1002/hbm.20619

Source DB:  PubMed          Journal:  Hum Brain Mapp        ISSN: 1065-9471            Impact factor:   5.038


  43 in total

1.  Diffusion tensor imaging and axonal tracking in the human brainstem.

Authors:  B Stieltjes; W E Kaufmann; P C van Zijl; K Fredericksen; G D Pearlson; M Solaiyappan; S Mori
Journal:  Neuroimage       Date:  2001-09       Impact factor: 6.556

2.  Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain.

Authors:  Bruce Fischl; David H Salat; Evelina Busa; Marilyn Albert; Megan Dieterich; Christian Haselgrove; Andre van der Kouwe; Ron Killiany; David Kennedy; Shuna Klaveness; Albert Montillo; Nikos Makris; Bruce Rosen; Anders M Dale
Journal:  Neuron       Date:  2002-01-31       Impact factor: 17.173

3.  Fiber tract-based atlas of human white matter anatomy.

Authors:  Setsu Wakana; Hangyi Jiang; Lidia M Nagae-Poetscher; Peter C M van Zijl; Susumu Mori
Journal:  Radiology       Date:  2003-11-26       Impact factor: 11.105

4.  Characterization of anisotropy in high angular resolution diffusion-weighted MRI.

Authors:  Lawrence R Frank
Journal:  Magn Reson Med       Date:  2002-06       Impact factor: 4.668

5.  Spatial normalization of diffusion tensor MRI using multiple channels.

Authors:  Hae-Jeong Park; Marek Kubicki; Martha E Shenton; Alexandre Guimond; Robert W McCarley; Stephan E Maier; Ron Kikinis; Ferenc A Jolesz; Carl-Fredrik Westin
Journal:  Neuroimage       Date:  2003-12       Impact factor: 6.556

6.  Characterization and propagation of uncertainty in diffusion-weighted MR imaging.

Authors:  T E J Behrens; M W Woolrich; M Jenkinson; H Johansen-Berg; R G Nunes; S Clare; P M Matthews; J M Brady; S M Smith
Journal:  Magn Reson Med       Date:  2003-11       Impact factor: 4.668

7.  Method for combining information from white matter fiber tracking and gray matter parcellation.

Authors:  Hae-Jeong Park; Marek Kubicki; Carl-Fredrik Westin; Ion-Florin Talos; Anders Brun; Steve Peiper; Ron Kikinis; Ference A Jolesz; Robert W McCarley; Martha E Shenton
Journal:  AJNR Am J Neuroradiol       Date:  2004-09       Impact factor: 3.825

8.  A Bayesian approach for stochastic white matter tractography.

Authors:  Ola Friman; Gunnar Farnebäck; Carl-Fredrik Westin
Journal:  IEEE Trans Med Imaging       Date:  2006-08       Impact factor: 10.048

9.  Accuracy of diffusion tensor magnetic resonance imaging tractography assessed using intraoperative subcortical stimulation mapping and magnetic source imaging.

Authors:  Jeffrey I Berman; Mitchel S Berger; Sung Won Chung; Srikantan S Nagarajan; Roland G Henry
Journal:  J Neurosurg       Date:  2007-09       Impact factor: 5.115

10.  Imaging cortical association tracts in the human brain using diffusion-tensor-based axonal tracking.

Authors:  Susumu Mori; Walter E Kaufmann; Christos Davatzikos; Bram Stieltjes; Laura Amodei; Kim Fredericksen; Godfrey D Pearlson; Elias R Melhem; Meiyappan Solaiyappan; Gerald V Raymond; Hugo W Moser; Peter C M van Zijl
Journal:  Magn Reson Med       Date:  2002-02       Impact factor: 4.668

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  98 in total

Review 1.  Graph theoretical analysis of structural and functional connectivity MRI in normal and pathological brain networks.

Authors:  Maxime Guye; Gaelle Bettus; Fabrice Bartolomei; Patrick J Cozzone
Journal:  MAGMA       Date:  2010-03-27       Impact factor: 2.310

2.  Feasibility of prefronto-caudate pathway tractography using high resolution diffusion tensor tractography data at 3T.

Authors:  Arash Kamali; Larry A Kramer; Khader M Hasan
Journal:  J Neurosci Methods       Date:  2010-06-30       Impact factor: 2.390

Review 3.  Principles and limitations of computational algorithms in clinical diffusion tensor MR tractography.

Authors:  H-W Chung; M-C Chou; C-Y Chen
Journal:  AJNR Am J Neuroradiol       Date:  2010-03-18       Impact factor: 3.825

4.  Diffusion tensor imaging biomarkers for traumatic axonal injury: analysis of three analytic methods.

Authors:  Carlos D Marquez de la Plata; Fanpei Gloria Yang; Jun Yi Wang; Kamini Krishnan; Khamid Bakhadirov; Christopher Paliotta; Sina Aslan; Michael D Devous; Carol Moore; Caryn Harper; Roderick McColl; C Munro Cullum; Ramon Diaz-Arrastia
Journal:  J Int Neuropsychol Soc       Date:  2010-11-12       Impact factor: 2.892

Review 5.  Structural brain atlases: design, rationale, and applications in normal and pathological cohorts.

Authors:  Pravat K Mandal; Rashima Mahajan; Ivo D Dinov
Journal:  J Alzheimers Dis       Date:  2012       Impact factor: 4.472

6.  The Pediatric Imaging, Neurocognition, and Genetics (PING) Data Repository.

Authors:  Terry L Jernigan; Timothy T Brown; Donald J Hagler; Natacha Akshoomoff; Hauke Bartsch; Erik Newman; Wesley K Thompson; Cinnamon S Bloss; Sarah S Murray; Nicholas Schork; David N Kennedy; Joshua M Kuperman; Connor McCabe; Yoonho Chung; Ondrej Libiger; Melanie Maddox; B J Casey; Linda Chang; Thomas M Ernst; Jean A Frazier; Jeffrey R Gruen; Elizabeth R Sowell; Tal Kenet; Walter E Kaufmann; Stewart Mostofsky; David G Amaral; Anders M Dale
Journal:  Neuroimage       Date:  2015-05-01       Impact factor: 6.556

7.  White Matter Tract Integrity, Involvement in Sports, and Depressive Symptoms in Children.

Authors:  Lisa S Gorham; Deanna M Barch
Journal:  Child Psychiatry Hum Dev       Date:  2020-01-25

8.  Does bilingualism increase brain or cognitive reserve in patients with temporal lobe epilepsy?

Authors:  Anny Reyes; Brianna M Paul; Anisa Marshall; Yu-Hsuan A Chang; Naeim Bahrami; Leena Kansal; Vicente J Iragui; Evelyn S Tecoma; Tamar H Gollan; Carrie R McDonald
Journal:  Epilepsia       Date:  2018-04-16       Impact factor: 5.864

9.  Multimodal imaging of language reorganization in patients with left temporal lobe epilepsy.

Authors:  Yu-Hsuan A Chang; Nobuko Kemmotsu; Kelly M Leyden; N Erkut Kucukboyaci; Vicente J Iragui; Evelyn S Tecoma; Leena Kansal; Marc A Norman; Rachelle Compton; Tobin J Ehrlich; Vedang S Uttarwar; Anny Reyes; Brianna M Paul; Carrie R McDonald
Journal:  Brain Lang       Date:  2017-04-20       Impact factor: 2.381

10.  Neuroanatomical assessment of biological maturity.

Authors:  Timothy T Brown; Joshua M Kuperman; Yoonho Chung; Matthew Erhart; Connor McCabe; Donald J Hagler; Vijay K Venkatraman; Natacha Akshoomoff; David G Amaral; Cinnamon S Bloss; B J Casey; Linda Chang; Thomas M Ernst; Jean A Frazier; Jeffrey R Gruen; Walter E Kaufmann; Tal Kenet; David N Kennedy; Sarah S Murray; Elizabeth R Sowell; Terry L Jernigan; Anders M Dale
Journal:  Curr Biol       Date:  2012-08-16       Impact factor: 10.834

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