Literature DB >> 18670870

Virtual Retina: a biological retina model and simulator, with contrast gain control.

Adrien Wohrer1, Pierre Kornprobst.   

Abstract

We propose a new retina simulation software, called Virtual Retina, which transforms a video into spike trains. Our goal is twofold: Allow large scale simulations (up to 100,000 neurons) in reasonable processing times and keep a strong biological plausibility, taking into account implementation constraints. The underlying model includes a linear model of filtering in the Outer Plexiform Layer, a shunting feedback at the level of bipolar cells accounting for rapid contrast gain control, and a spike generation process modeling ganglion cells. We prove the pertinence of our software by reproducing several experimental measurements from single ganglion cells such as cat X and Y cells. This software will be an evolutionary tool for neuroscientists that need realistic large-scale input spike trains in subsequent treatments, and for educational purposes.

Mesh:

Year:  2008        PMID: 18670870     DOI: 10.1007/s10827-008-0108-4

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  64 in total

1.  Synaptic currents generating the inhibitory surround of ganglion cells in the mammalian retina.

Authors:  N Flores-Herr; D A Protti; H Wässle
Journal:  J Neurosci       Date:  2001-07-01       Impact factor: 6.167

2.  Rate coding versus temporal order coding: what the retinal ganglion cells tell the visual cortex.

Authors:  R Van Rullen; S J Thorpe
Journal:  Neural Comput       Date:  2001-06       Impact factor: 2.026

3.  Profound contrast adaptation early in the visual pathway.

Authors:  Samuel G Solomon; Jonathan W Peirce; Neel T Dhruv; Peter Lennie
Journal:  Neuron       Date:  2004-04-08       Impact factor: 17.173

4.  Spike generator limits efficiency of information transfer in a retinal ganglion cell.

Authors:  Narender K Dhingra; Robert G Smith
Journal:  J Neurosci       Date:  2004-03-24       Impact factor: 6.167

5.  Visual transduction in cones of the monkey Macaca fascicularis.

Authors:  J L Schnapf; B J Nunn; M Meister; D A Baylor
Journal:  J Physiol       Date:  1990-08       Impact factor: 5.182

6.  Spatiotemporal patterns at the retinal output.

Authors:  A L Jacobs; F S Werblin
Journal:  J Neurophysiol       Date:  1998-07       Impact factor: 2.714

7.  Spatiotemporal receptive field organization in the lateral geniculate nucleus of cats and kittens.

Authors:  D Cai; G C DeAngelis; R D Freeman
Journal:  J Neurophysiol       Date:  1997-08       Impact factor: 2.714

8.  The receptive-field spatial structure of cat retinal Y cells.

Authors:  C Enroth-Cugell; A W Freeman
Journal:  J Physiol       Date:  1987-03       Impact factor: 5.182

Review 9.  Turned on by Ca2+! The physiology and pathology of Ca(2+)-binding proteins in the retina.

Authors:  A Polans; W Baehr; K Palczewski
Journal:  Trends Neurosci       Date:  1996-12       Impact factor: 13.837

10.  The effect of contrast on the transfer properties of cat retinal ganglion cells.

Authors:  R M Shapley; J D Victor
Journal:  J Physiol       Date:  1978-12       Impact factor: 5.182

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  18 in total

1.  Relative spike time coding and STDP-based orientation selectivity in the early visual system in natural continuous and saccadic vision: a computational model.

Authors:  Timothée Masquelier
Journal:  J Comput Neurosci       Date:  2011-09-21       Impact factor: 1.621

2.  Simulation of retinal ganglion cell response using fast independent component analysis.

Authors:  Guanzheng Wang; Rubin Wang; Wanzheng Kong; Jianhai Zhang
Journal:  Cogn Neurodyn       Date:  2018-07-07       Impact factor: 5.082

3.  Information coding in a laminar computational model of cat primary visual cortex.

Authors:  Gleb Basalyga; Marcelo A Montemurro; Thomas Wennekers
Journal:  J Comput Neurosci       Date:  2012-08-21       Impact factor: 1.621

4.  A dynamical model for generating synthetic data to quantify active tactile sensing behavior in the rat.

Authors:  Nadina O Zweifel; Nicholas E Bush; Ian Abraham; Todd D Murphey; Mitra J Z Hartmann
Journal:  Proc Natl Acad Sci U S A       Date:  2021-07-06       Impact factor: 11.205

5.  Retinal Lateral Inhibition Provides the Biological Basis of Long-Range Spatial Induction.

Authors:  Jihyun Yeonan-Kim; Marcelo Bertalmío
Journal:  PLoS One       Date:  2016-12-28       Impact factor: 3.240

6.  Versatile networks of simulated spiking neurons displaying winner-take-all behavior.

Authors:  Yanqing Chen; Jeffrey L McKinstry; Gerald M Edelman
Journal:  Front Comput Neurosci       Date:  2013-03-19       Impact factor: 2.380

7.  Volterra dendritic stimulus processors and biophysical spike generators with intrinsic noise sources.

Authors:  Aurel A Lazar; Yiyin Zhou
Journal:  Front Comput Neurosci       Date:  2014-09-01       Impact factor: 2.380

8.  A cascade model of information processing and encoding for retinal prosthesis.

Authors:  Zhi-Jun Pei; Guan-Xin Gao; Bo Hao; Qing-Li Qiao; Hui-Jian Ai
Journal:  Neural Regen Res       Date:  2016-04       Impact factor: 5.135

9.  Microsaccades enable efficient synchrony-based coding in the retina: a simulation study.

Authors:  Timothée Masquelier; Geoffrey Portelli; Pierre Kornprobst
Journal:  Sci Rep       Date:  2016-04-11       Impact factor: 4.379

10.  A normalized contrast-encoding model exhibits bright/dark asymmetries similar to early visual neurons.

Authors:  Emily A Cooper
Journal:  Physiol Rep       Date:  2016-04
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