| Literature DB >> 18669893 |
Amanda J Walne1, Tom Vulliamy, Richard Beswick, Michael Kirwan, Inderjeet Dokal.
Abstract
Dyskeratosis congenita (DC) is a multisystem bone marrow failure syndrome characterized by a triad of mucocutaneous abnormalities and a predisposition to cancer. The genetic basis of DC remains unknown in more than 60% of patients. Mutations have been identified in components of the telomerase complex (dyskerin, TERC, TERT, NOP10, and NHP2), and recently in one component of the shelterin complex TIN2 (gene TINF2). To establish the role of TINF2 mutations, we screened DNA from 175 uncharacterised patients with DC as well as 244 patients with other bone marrow failure disorders. Heterozygous coding mutations were found in 33 of 175 previously uncharacterized DC index patients and 3 of 244 other patients. A total of 21 of the mutations affected amino acid 282, changing arginine to histidine (n = 14) or cysteine (n = 7). A total of 32 of 33 patients with DC with TINF2 mutations have severe disease, with most developing aplastic anaemia by the age of 10 years. Telomere lengths in patients with TINF2 mutations were the shortest compared with other DC subtypes, but TERC levels were normal. In this large series, TINF2 mutations account for approximately 11% of all DC, but they do not play a significant role in patients with related disorders. This study emphasises the role of defective telomere maintenance on human disease.Entities:
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Year: 2008 PMID: 18669893 PMCID: PMC2572788 DOI: 10.1182/blood-2008-05-153445
Source DB: PubMed Journal: Blood ISSN: 0006-4971 Impact factor: 22.113
Primer sequences for PCR amplification of TINF2
| Fragment | Exon | Forward | Reverse | Product size, bp |
|---|---|---|---|---|
| 1 | 1 | 600 | ||
| 2 | 2 + 3 | 463 | ||
| 3 | 4 + 5 | 455 | ||
| 4 | 6 | 617 | ||
| 5 | 611 | |||
| 6 | 552 |
Primers are designed to genomic accession number AL096870. Fragment 1 includes the 5′ untranslated region (UTR). Fragments 4, 5, and 6 overlap and cover the alternative splice regions detailed in the 3′ UTR and described as 2 different isoforms (isoform 1, nm_001099274; isoform 2, nm_012461). All PCR amplifications were performed using 2 mM magnesium with an annealing temperature of 58°C for 30 cycles. Exceptions to this were for fragments 2 and 3, where 10% DMSO was used and the annealing temperature was increased to 60°C.
Characteristics of patients with TINF2 mutations
| DCRno. | Diagnosis | Age, y/sex | Nail dystrophy | Skin abnormality | Leukoplakia | Other features | AA | Hb, g/L | WBC, ×109/L | Platelets, ×109/L | Base change | Amino acid change |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45 | DC/HH/RS | 1/M | + | − | − | Retinopathy, intercranial calcification | + | NA | NA | NA | c.838A>T | Lys280X |
| 282 | HH/RS | 3/M | + | − | + | Microcephaly, short stature, retinopathy, intracerebral calcifications, BMT age 3 y | + | 95 | 1.3 | 15 | c.838A>T | Lys280X |
| 19 I1 | DC | 37/M | + | + | + | Bronchitis | + | 129 | 8.1 | 142 | c.844C>T | Arg282Cys |
| II2 | AA | 4/F | − | − | − | + | 87 | 3.1 | 26 | c.844C>T | Arg282Cys | |
| II3 | AA | 7/NA | − | − | − | + | NA | NA | NA | c.844C>T | Arg282Cys | |
| 24 I1 | DC | 24/M | + | − | + | Post-BMT lung disease, died 36 y | + | NA | NA | NA | c.844C>T | Arg282Cys |
| I2 | DC | 2/F | + | − | − | Died AA 9 y | + | NA | NA | NA | NA | NA |
| 36 | DC | 12/M | + | + | − | No family history | + | 58 | 8.2 | 40 | c.844C>T | Arg282Cys |
| 139 | DC | 9/F | + | − | − | Short, fine hair, lacrimal duct stenosis | + | 100 | 2.3 | 15 | c.844C>T | Arg282Cys |
| 181 | DC | 41/M | + | − | − | Pulmonary fibrosis, squamous Ca, alopecia | − | 1250 | 10.8 | 106 | c.844C>T | Arg282Cys |
| 189 | DC | 11/M | + | + | − | Short stature | + | 125 | 5.4 | 30 | c.844C>T | Arg282Cys |
| 195 | DC | 14/M | + | + | + | Osteoporosis, SAA-BMT age 5 y | + | NA | NA | NA | c.844C>T | Arg282Cys |
| 18 | DC | NA/M | NA | NA | NA | DC with AA | + | NA | NA | NA | c.845G>A | Arg282His |
| 40 | DC | 13/M | + | + | − | Phimosis, osteoporosis | + | 113 | 3.9 | 8 | c.845G>A | Arg282His |
| 54 | DC | NA/M | + | ? | ? | + | NA | NA | NA | c.845G>A | Arg282His | |
| 85 | DC | 4/M | + | − | − | AA–transfusion dependent | + | NA | NA | NA | c.845G>A | Arg282His |
| 90 | DC/HH/RS | 3/M | + | − | − | Retinopathy, deaf, microcephaly, learning problems | + | 87 | 4.1 | 14 | c.845G>A | Arg282His |
| 95 | DC | 4/M | + | + | + | Epiphora, osteoporosis | + | 73 | 1.5 | 20 | c.845G>A | Arg282His |
| 130 | DC/RS | 4/M | + | + | + | Retinopathy, heart defect, SAA | + | 75 | 1.3 | 24 | c.845G>A | Arg282His |
| 220 | DC | 9/F | + | + | + | Hair loss, osteoporosis, BMT age 1 y for SAA | + | 72 | NA | 19 | c.845G>A | Arg282His |
| 250 | DC | 7/M | + | − | + | Thin skin on trunk | + | 95 | 2.1 | 20 | c.845G>A | Arg282His |
| 253 | HH | 2/F | − | − | + | Microcephaly, cerebellar hypoplasia, developmental delay, low NK cells | + | 107 | 4.3 | 15 | c.845G>A | Arg282His |
| 258 | DC | 5/M | + | + | + | Epiphora, hyperhiderosis, undescended testes | + | 85 | 2.4 | 36 | c.845G>A | Arg282His |
| 265 | HH | 1/F | − | − | + | Developmental delay, cerebellar atrophy, hypotonia, short stature | + | 80 | 0.5-1.0 | <10 | c.845G>A | Arg282His |
| 269 | DC | 5/M | + | − | − | Alopecia, dental loss, short stature, skeletal defects | + | 105 | 3.8 | 25 | c.845G>A | Arg282His |
| 283 | DC | 4/M | + | + | + | Alopecia, osteoporosis, BMT for SAA | + | 60 | 3.4 | 2.0 | c.845G>A | Arg282His |
| 126 | DC/HH | 4/M | + | − | + | Ataxia, BMT age 4 y, pulmonary disease after BMT | + | 86 | 5.0 | 10 | c.847C>T | Pro283Ser |
| 211 | DC | 9/F | + | + | + | Alopecia, hyperhiderosis, dental loss, short stature, BMT age 3 y | + | 86 | 4.7 | 28 | c.847C>G | Pro283Ala |
| 276 | DC | 2/M | + | + | − | AA at age 1 y | + | 93 | 1.3 | 10 | c.848C>A | Pro283His |
| 89 | DC | 6/M | + | + | + | Response to oxymetholone | + | 106 | 3.9 | 10 | c.850A>G | Thr284Ala |
| 273 | DC/AA | 4/M | + | + | − | AA at age 1 y | + | 105 | 3.5 | 30 | c.849 850insC | Thr284HisfsX8 |
| 206 | DC | 10/F | + | + | − | Osteoporosis, BMT for SAA at 6 y | + | 120 | <2 | 20 | c.860T>C | Leu287Pro |
| 69 | DC | 12/M | + | + | + | DC with SAA | + | 114 | 3.9 | 12 | c.865 866 delinsAG | Pro289Ser |
| 133 | DC | 7/M | − | + | + | Microcephaly, short stature, learning difficulties | + | 70 | 2.0 | 10 | c.867 868insC | Phe290LeufsX2 |
| 94 | DC | 29/F | + | + | + | DC with AA, therapy with androgens | + | 72 | 2.21 | 39 | c.871A>G | Arg291Gly |
| 14 | DC | 15/F | + | + | + | Lacrimal duct stenosis, BMT for SAA age 11 y | + | 71 | 2.3 | 10 | c.892delC | Gln298Arg fsX19 |
| 1293 | AA | 4/M | − | − | − | AA at age 3 y | + | 82 | 6.1 | 26 | c.706C>T | Pro236Ser |
| 1771 | AA | 50/M | − | − | − | AA age 50 y | + | NA | NA | NA | c.734C>A | Ser245Tyr |
| 14433 | Low WBC | 40/M | − | − | − | Low WBC at age ∼30 y | + | 154 | 2.7 | 194 | c.841G>A | Glu281Lys |
Age indicates age when sample was obtained; BMT, bone marrow transplantation; Ca, carcinoma; DCR no., Dyskeratosis Congenita Registry number; F, female; Hb, hemoglobin; M, male; NA, not available; NK, natural killer cells; SAA, severe AA; WBC, white blood cells; +, present; −, absent; and ?, diagnosis unclear.
Nomenclature as recommended by the Human Genome Variation Society (http://www.hgvs.org/rec.html).
Figure 1Conservation of amino acids in a small region of TIN2 between different species. Close-up of the residues mutated in the patients with DC. Arrows indicate the sites of mutations. Changes are K280X (n = 2), R282C (n = 7), R282H (n = 14), P283A, P283H, P283S, T284A, T284Hfs8X, L287P, P289S, F290LfsX2, R291G, and Q298RfsX19. Red indicates highly conserved; blue, limited conservation; black, no conservation. Alignment obtained using MultAlin.[20]
Figure 2Telomere lengths in patients with DC with (A) Telomere lengths in healthy controls (○, n = 112), patients (♦, n = 16) and parents (, n = 15). (B) Telomere length compassion between DC patients with TINF2 mutations (♦, n = 16), DKC1 mutations (, n = 67) and healthy controls (○, n = 112). The line of best fit for the healthy controls is shown in panels A and B. (C) Comparison of age-adjusted delta Tel in healthy controls and patients with DKC1 and TINF2 mutations. The box represents the interquartile range which contains the 50% of values. The whiskers are lines that extend from the box to the highest and lowest values, excluding outliers and extreme outliers (○ and , respectively). A line across the box indicates the median.
Figure 3TERC/ABL levels are not reduced in patients with DC with Comparison of TERC/ABL levels between healthy controls (n = 24), patients with DC with TINF2 mutations (n = 5), and patients with DC with DKC1 mutations (n = 26). The P value between TERC/ABL levels for TINF2 and DKC1 patients is given. The box represents the interquartile range which contains the 50% of values. The whiskers are lines that extend from the box to the highest and lowest values, excluding outliers (△). A line across the box indicates the median.
Summary of the main characteristics of patients (with TINF2 mutations) in this study group compared with patients with DC in general
| Clinical feature | No. index patients in this study | Percentage of patients in this study | Percentage of patients reported in DC[ |
|---|---|---|---|
| AA at any age | 32 | 97 | 86 |
| AA at < 10 y | 21 | 63 | 51 |
| Nail dystrophy | 29 | 88 | 88 |
| Abnormal skin pigmentation | 19 | 58 | 89 |
| Leukoplakia | 19 | 58 | 78 |
| Classical triad | 12 | 36 | NA |
| Features of HH | 6 | 18 | NA |
| Osteoporosis | 6 | 18 | NA |
| Retinopathy (Revesz syndrome) | 4 | 12 | NA |
Classical triad indicates combination of nail dystrophy, abnormal skin pigmentation, and leukoplakia; NA, data not available.