| Literature DB >> 18663568 |
Binu T Velayudhan1, Qingzhong Yu, Carlos N Estevez, Kakambi V Nagaraja, David A Halvorson.
Abstract
The length of the published glycoprotein (G) gene sequences of avian metapneumovirus subtype-C (aMPV-C) isolated from domestic turkeys and wild birds in the United States (1996-2003) remains controversial. To explore the G gene size variation in aMPV-C by the year of isolation and cell culture passage levels, we examined 21 turkey isolates of aMPV-C at different cell culture passages. The early domestic turkey isolates of aMPV-C (aMPV/CO/1996, aMPV/MN/1a-b, and 2a-b/97) had a G gene of 1,798 nucleotides (nt) that coded for a predicted protein of 585 amino acids (aa) and showed >97% nt similarity with that of aMPV-C isolated from Canada geese. This large G gene got truncated upon serial passages in Vero cell cultures by deletion of 1,015 nt near the end of the open reading frame. The recent domestic turkey isolates of aMPV-C lacked the large G gene but instead had a small G gene of 783 nt, irrespective of cell culture passage levels. In some cultures, both large and small genes were detected, indicating the existence of a mixed population of the virus. Apparently, serial passage of aMPV-C in cell cultures and natural passage in turkeys in the field led to truncation of the G gene, which may be a mechanism of virus evolution for survival in a new host or environment.Entities:
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Year: 2008 PMID: 18663568 PMCID: PMC2516547 DOI: 10.1007/s11262-008-0220-6
Source DB: PubMed Journal: Virus Genes ISSN: 0920-8569 Impact factor: 2.332
Different isolates of aMPV/C from naturally infected turkeys used for the analysis of glycoprotein gene
| No. | Source | County | Designated name |
|---|---|---|---|
| 1 | Turbinate | Weld | aMPV/Colorado/Turkey/1996 |
| 2 | Turbinate | Becker | aMPV/Minnesota/Turkey/1a/1997 |
| 3 | Tracheal Swab | Becker | aMPV/Minnesota/Turkey/1b/1997 |
| 4 | Turbinate | Meeker | aMPV/Minnesota/Turkey/2a/1997 |
| 5 | Tracheal Swab | Meeker | aMPV/Minnesota/Turkey/2b/1997 |
| 6 | Turbinate | Steele | aMPV/Minnesota/Turkey/4a/1999 |
| 7 | Choanal Swab | Steele | aMPV/Minnesota/Turkey/4b/1999 |
| 8 | Choanal Swab | Steele | aMPV/Minnesota/Turkey/4c/1999 |
| 9 | Choanal Swab | Rice | aMPV/Minnesota/Turkey/5/1999 |
| 10 | Turbinate | Steele | aMPV/Minnesota/Turkey/6/1999 |
| 11 | Choanal Swab | Meeker | aMPV/Minnesota/Turkey/7/1999 |
| 12 | Turbinate | Meeker | aMPV/Minnesota/Turkey/8/1999 |
| 13 | Turbinate | Meeker | aMPV/Minnesota/Turkey/9/1999 |
| 14 | Turbinate | Kandiyohi | aMPV/Minnesota/Turkey/10/1999 |
| 15 | Turbinate | Stearns | aMPV/Minnesota/Turkey/11/1999 |
| 16 | Turbinate | Meeker | aMPV/Minnesota/Turkey/13/2000 |
| 17 | Turbinate | Meeker | aMPV/Minnesota/Turkey/14/2001 |
| 18 | Turbinate | Ottertail | aMPV/Minnesota/Turkey/16/2000 |
| 19 | Turbinate | Kandiyohi | aMPV/Minnesota/Turkey/17/2000 |
| 20 | Turbinate | Kandiyohi | aMPV/Minnesota/Turkey/18/2000 |
| 21 | Choanal Swab | Rice | aMPV/Minnesota/Turkey/19/2003 |
Glycoprotein gene sizes of different isolates of avian metapneumovirus subtype C at different cell culture passage levels
| No. | Virus designation | Passage level CEF/Vero | Size of glycoprotein gene RT-PCR product (kbp) |
|---|---|---|---|
| 1a | aMPV/Colorado/Turkey/1996 | CEFp6 | 1.8 |
| 1b | aMPV/Colorado/Turkey/1996 | CEFp6; Verop7 | 0.8 |
| 2a | aMPV/Minnesota/Turkey/1a/1997 | CEFp5 | 1.8 |
| 2b | aMPV/Minnesota/Turkey/1a/1997 | CEFp5; Verop7 | 0.8 |
| 3 | aMPV/Minnesota/Turkey/1b/1997 | CEFp5 | 1.8 |
| 4a | aMPV/Minnesota/Turkey/2a/1997 | CEFp5 | 1.8 |
| 4b | aMPV/Minnesota/Turkey/2a/1997 | CEFp5; Verop13 | 0.8 |
| 5 | aMPV/Minnesota/Turkey/2b/1997 | CEFp5 | 1.8 |
| 6 | aMPV/Minnesota/Turkey/4a/1999 | CEFp5 | 0.8 |
| 7 | aMPV/Minnesota/Turkey/4b/1999 | CEFp5 | 0.8 |
| 8 | aMPV/Minnesota/Turkey/4c/1999 | CEFp5 | 0.8 |
| 9 | aMPV/Minnesota/Turkey/5/1999 | CEFp5 | 0.8 |
| 10 | aMPV/Minnesota/Turkey/6/1999 | CEFp5 | 0.8 |
| 11 | aMPV/Minnesota/Turkey/7/1999 | CEFp5 | 0.8 |
| 12 | aMPV/Minnesota/Turkey/8/1999 | CEFp5 | 0.8 |
| 13 | aMPV/Minnesota/Turkey/9/1999 | CEFp5 | 0.8 |
| 14 | aMPV/Minnesota/Turkey/10/1999 | CEFp5 | 0.8 |
| 15 | aMPV/Minnesota/Turkey/11/1999 | CEFp5 | 0.8 |
| 16 | aMPV/Minnesota/Turkey/13/2000 | CEFp5 | 0.8 |
| 17 | aMPV/Minnesota/Turkey/14/2001 | CEFp5 | 0.8 |
| 18 | aMPV/Minnesota/Turkey/16/2000 | CEFp5 | 0.8 |
| 19 | aMPV/Minnesota/Turkey/17/2000 | CEFp5 | 0.8 |
| 20 | aMPV/Minnesota/Turkey/18/2000 | CEFp5 | 0.8 |
| 21a | aMPV/Minnesota/Turkey/19/2003 | CEFp5 | 0.8 |
| 21b | aMPV/Minnesota/Turkey/19/2003 | CEFp5; Verop7 | 0.8 |
Fig. 1Nucleotide sequence of the large G gene of aMPV/C (sequence of aMPV/MN 1a; CEF p5 that showed a large G gene of 1798 bp in size). The gene start and stop signals are bolded and italicized. The underlined part of the sequence is the segment that got truncated upon serial passage in Vero cells
Fig. 2Nucleotide sequence of small G gene of aMPV/C (sequence of aMPV/MN 1a; CEF p5; Vero p7 that showed a small G gene of 783 bp in size). The gene start and stop signals are bolded and italicized