Literature DB >> 18658182

The CellML Model Repository.

Catherine M Lloyd1, James R Lawson, Peter J Hunter, Poul F Nielsen.   

Abstract

SUMMARY: The CellML Model Repository provides free access to over 330 biological models. The vast majority of these models are derived from published, peer-reviewed papers. Model curation is an important and ongoing process to ensure the CellML model is able to accurately reproduce the published results. As the CellML community grows, and more people add their models to the repository, model annotation will become increasingly important to facilitate data searches and information retrieval. AVAILABILITY: The CellML Model Repository is publicly accessible at http://www.cellml.org/models.

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Year:  2008        PMID: 18658182     DOI: 10.1093/bioinformatics/btn390

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  89 in total

1.  A tool for multi-scale modelling of the renal nephron.

Authors:  David P Nickerson; Jonna R Terkildsen; Kirk L Hamilton; Peter J Hunter
Journal:  Interface Focus       Date:  2011-03-30       Impact factor: 3.906

Review 2.  Consistent design schematics for biological systems: standardization of representation in biological engineering.

Authors:  Yukiko Matsuoka; Samik Ghosh; Hiroaki Kitano
Journal:  J R Soc Interface       Date:  2009-06-03       Impact factor: 4.118

3.  A thermodynamic model of the cardiac sarcoplasmic/endoplasmic Ca(2+) (SERCA) pump.

Authors:  Kenneth Tran; Nicolas P Smith; Denis S Loiselle; Edmund J Crampin
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

Review 4.  Designing and encoding models for synthetic biology.

Authors:  Lukas Endler; Nicolas Rodriguez; Nick Juty; Vijayalakshmi Chelliah; Camille Laibe; Chen Li; Nicolas Le Novère
Journal:  J R Soc Interface       Date:  2009-04-01       Impact factor: 4.118

Review 5.  The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms.

Authors:  Gil Alterovitz; Taro Muso; Marco F Ramoni
Journal:  Brief Bioinform       Date:  2009-11-11       Impact factor: 11.622

Review 6.  Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience.

Authors:  Robert A McDougal; Thomas M Morse; Ted Carnevale; Luis Marenco; Rixin Wang; Michele Migliore; Perry L Miller; Gordon M Shepherd; Michael L Hines
Journal:  J Comput Neurosci       Date:  2016-09-15       Impact factor: 1.621

7.  An overview of the CellML API and its implementation.

Authors:  Andrew K Miller; Justin Marsh; Adam Reeve; Alan Garny; Randall Britten; Matt Halstead; Jonathan Cooper; David P Nickerson; Poul F Nielsen
Journal:  BMC Bioinformatics       Date:  2010-04-08       Impact factor: 3.169

8.  Ranked retrieval of Computational Biology models.

Authors:  Ron Henkel; Lukas Endler; Andre Peters; Nicolas Le Novère; Dagmar Waltemath
Journal:  BMC Bioinformatics       Date:  2010-08-11       Impact factor: 3.169

9.  Towards reproducible descriptions of neuronal network models.

Authors:  Eilen Nordlie; Marc-Oliver Gewaltig; Hans Ekkehard Plesser
Journal:  PLoS Comput Biol       Date:  2009-08-07       Impact factor: 4.475

10.  BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models.

Authors:  Chen Li; Marco Donizelli; Nicolas Rodriguez; Harish Dharuri; Lukas Endler; Vijayalakshmi Chelliah; Lu Li; Enuo He; Arnaud Henry; Melanie I Stefan; Jacky L Snoep; Michael Hucka; Nicolas Le Novère; Camille Laibe
Journal:  BMC Syst Biol       Date:  2010-06-29
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