Literature DB >> 18650949

Loss of 5S rDNA units in the evolution of Agropyron, Pseudoroegneria, and Douglasdeweya.

B R Baum1, T Edwards, D A Johnson.   

Abstract

We have investigated relationships among the three closely related genera Agropyron, Pseudoroegneria, and Douglasdeweya. Based upon grouping of 330 5S rDNA sequences into unit classes, we found that Douglasdeweya, with the genomic constitution PPStSt, has 2 unit classes, the long P1 and short S1, and Pseudoroegneria, with the genomic constitution StSt or StStStSt, has the long S1 and short S1 unit classes. In contrast, only the long P1 unit class was found in species of the genus Agropyron (PP). Having a single unit class is unique among all the genera of the tribe Triticeae investigated so far and may reflect gene loss or lineage sorting during its genesis. The presence of the short S1 and long P1 unit classes confirms the amphiploid origin of Douglasdeweya.

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Year:  2008        PMID: 18650949     DOI: 10.1139/G08-045

Source DB:  PubMed          Journal:  Genome        ISSN: 0831-2796            Impact factor:   2.166


  4 in total

1.  Identification of 5S and 45S rDNA sites in Chrysanthemum species by using oligonucleotide fluorescence in situ hybridization (Oligo-FISH).

Authors:  Jun He; Sisi Lin; Zhongyu Yu; Aiping Song; Zhiyong Guan; Weimin Fang; Sumei Chen; Fei Zhang; Jiafu Jiang; Fadi Chen; Haibin Wang
Journal:  Mol Biol Rep       Date:  2021-01-17       Impact factor: 2.316

2.  Diversity within the genus Elymus (Poaceae: Triticeae) as investigated by the analysis of the nr5S rDNA variation in species with St and H haplomes.

Authors:  B R Baum; T Edwards; D A Johnson
Journal:  Mol Genet Genomics       Date:  2014-09-24       Impact factor: 3.291

3.  What does the nr5S DNA multigene family tell us about the genomic relationship between Dasypyrum breviaristatum and D. villosum (Triticeae: Poaceae)?

Authors:  B R Baum; T Edwards; D A Johnson
Journal:  Mol Genet Genomics       Date:  2014-03-09       Impact factor: 3.291

4.  The Utility of Graph Clustering of 5S Ribosomal DNA Homoeologs in Plant Allopolyploids, Homoploid Hybrids, and Cryptic Introgressants.

Authors:  Sònia Garcia; Jonathan F Wendel; Natalia Borowska-Zuchowska; Malika Aïnouche; Alena Kuderova; Ales Kovarik
Journal:  Front Plant Sci       Date:  2020-02-10       Impact factor: 5.753

  4 in total

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