Literature DB >> 18647339

Does frequency-dependent selection with complex dominance interactions accurately predict allelic frequencies at the self-incompatibility locus in Arabidopsis halleri?

Violane Llaurens1, Sylvain Billiard, Jean-Baptiste Leducq, Vincent Castric, Etienne Karl Klein, Xavier Vekemans.   

Abstract

Frequency-dependent selection is a major force determining the evolutionary dynamics of alleles at the self-incompatibility locus (S-locus) in flowering plants. We introduce a general method using numerical simulations to test several alternative models of frequency-dependent selection on S-locus data from sporophytic systems, taking into account both genetic drift and observed patterns of dominance interactions among S-locus haplotypes (S-haplotypes). Using a molecular typing method, we estimated S-haplotype frequencies in a sample of 322 adult plants and of 245 offspring obtained from seeds sampled on 22 maternal plants, collected in a single population of Arabidopsis halleri (Brassicaceae). We found eight different S-haplotypes and characterized their dominance interactions by controlled pollinations. We then compared the likelihood of different models of frequency-dependent selection: we found that the observed haplotype frequencies and observed frequency changes in one generation best fitted a model with (1) the observed dominance interactions and (2) no pollen limitation. Overall, our population genetic models of frequency-dependent selection, including patterns of dominance interactions among S-haplotypes and genetic drift, can reliably predict polymorphism at the S-locus. We discuss how these approaches allow detecting additional processes influencing the evolutionary dynamics of the S-locus, such as purifying selection on linked loci.

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Mesh:

Year:  2008        PMID: 18647339     DOI: 10.1111/j.1558-5646.2008.00469.x

Source DB:  PubMed          Journal:  Evolution        ISSN: 0014-3820            Impact factor:   3.694


  15 in total

1.  Effect of balancing selection on spatial genetic structure within populations: theoretical investigations on the self-incompatibility locus and empirical studies in Arabidopsis halleri.

Authors:  J-B Leducq; V Llaurens; V Castric; P Saumitou-Laprade; O J Hardy; X Vekemans
Journal:  Heredity (Edinb)       Date:  2010-06-09       Impact factor: 3.821

2.  The sheltered genetic load linked to the s locus in plants: new insights from theoretical and empirical approaches in sporophytic self-incompatibility.

Authors:  Violaine Llaurens; Lucy Gonthier; Sylvain Billiard
Journal:  Genetics       Date:  2009-09-14       Impact factor: 4.562

Review 3.  Epigenetic regulation of agronomical traits in Brassicaceae.

Authors:  Etsuko Itabashi; Kenji Osabe; Ryo Fujimoto; Tomohiro Kakizaki
Journal:  Plant Cell Rep       Date:  2017-10-20       Impact factor: 4.570

Review 4.  Multilayered dominance hierarchy in plant self-incompatibility.

Authors:  Sota Fujii; Seiji Takayama
Journal:  Plant Reprod       Date:  2017-12-16       Impact factor: 3.767

5.  Base-Pairing Requirements for Small RNA-Mediated Gene Silencing of Recessive Self-Incompatibility Alleles in Arabidopsis halleri.

Authors:  Nicolas Burghgraeve; Samson Simon; Simon Barral; Isabelle Fobis-Loisy; Anne-Catherine Holl; Chloé Ponitzki; Eric Schmitt; Xavier Vekemans; Vincent Castric
Journal:  Genetics       Date:  2020-05-27       Impact factor: 4.562

Review 6.  Plant sexual reproduction during climate change: gene function in natura studied by ecological and evolutionary systems biology.

Authors:  Kentaro K Shimizu; Hiroshi Kudoh; Masaki J Kobayashi
Journal:  Ann Bot       Date:  2011-08-17       Impact factor: 4.357

7.  Recent loss of self-incompatibility by degradation of the male component in allotetraploid Arabidopsis kamchatica.

Authors:  Takashi Tsuchimatsu; Pascal Kaiser; Chow-Lih Yew; Julien B Bachelier; Kentaro K Shimizu
Journal:  PLoS Genet       Date:  2012-07-26       Impact factor: 5.917

8.  Inference of selection based on temporal genetic differentiation in the study of highly polymorphic multigene families.

Authors:  Mark McMullan; Cock van Oosterhout
Journal:  PLoS One       Date:  2012-08-10       Impact factor: 3.240

9.  Self-incompatibility in Brassicaceae: identification and characterization of SRK-like sequences linked to the S-locus in the tribe Biscutelleae.

Authors:  Jean-Baptiste Leducq; Célia C Gosset; Rita Gries; Kevin Calin; Eric Schmitt; Vincent Castric; Xavier Vekemans
Journal:  G3 (Bethesda)       Date:  2014-06-17       Impact factor: 3.154

10.  Genome Sequencing Reveals the Origin of the Allotetraploid Arabidopsis suecica.

Authors:  Polina Yu Novikova; Takashi Tsuchimatsu; Samson Simon; Viktoria Nizhynska; Viktor Voronin; Robin Burns; Olga M Fedorenko; Svante Holm; Torbjörn Säll; Elisa Prat; William Marande; Vincent Castric; Magnus Nordborg
Journal:  Mol Biol Evol       Date:  2017-04-01       Impact factor: 8.800

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