Literature DB >> 18645626

H2A.Z-Mediated Genome-Wide Chromatin Specialization.

Jm Eirín-López1, J Ausió.   

Abstract

The characterization of the involvement of different histone post-translational modifications (PTMs) and histone variants in chromatin structure has represented one of the most recurrent topics in molecular biology during the last decade (since 1996). The interest in this topic underscores the critical roles played by chromatin in such important processes as DNA packaging, DNA repair and recombination, and regulation of gene expression. The genomic information currently available has pushed the boundaries of this research a step further, from the study of local domains to the genome-wide characterization of the mechanisms governing chromatin dynamics. How the heterchromatin and euchromatin compartmentalization is established has been the subject of recent extensive research. Many PTMs, as well as histone variants have been identified to play a role, including the replacement of histone H2A by the histone variant H2A.Z. Several studies have provided support to a role for H2A.Z (known as Htz1 in yeast) in transcriptional regulation, chromosome structure, DNA repair and heterochromatin formation. Although the mechanisms by which H2A.Z defines different structural regions in the chromatin have long remained elusive, various reports published last year have shed new insight into this process. The present mini review focuses its attention on the genome-wide distribution of H2A.Z, with special attention to the mechanisms involved in its distribution and exchange as well as on the role of its N-terminal acetylation.

Entities:  

Keywords:  Acetylation; Gene Activity; Genome-Wide Distribution; H2A.Z; Heterochromatin; Promoter Regions

Year:  2007        PMID: 18645626      PMCID: PMC2474686          DOI: 10.2174/138920207780076965

Source DB:  PubMed          Journal:  Curr Genomics        ISSN: 1389-2029            Impact factor:   2.236


  39 in total

Review 1.  New twists on H2A.Z: a histone variant with a controversial structural and functional past.

Authors:  Deanna Dryhurst; Anita A Thambirajah; Juan Ausió
Journal:  Biochem Cell Biol       Date:  2004-08       Impact factor: 3.626

2.  Methylation of H3 lysine 4 at euchromatin promotes Sir3p association with heterochromatin.

Authors:  Helena Santos-Rosa; Andrew J Bannister; Pierre M Dehe; Vincent Géli; Tony Kouzarides
Journal:  J Biol Chem       Date:  2004-07-27       Impact factor: 5.157

3.  Genome-scale identification of nucleosome positions in S. cerevisiae.

Authors:  Guo-Cheng Yuan; Yuen-Jong Liu; Michael F Dion; Michael D Slack; Lani F Wu; Steven J Altschuler; Oliver J Rando
Journal:  Science       Date:  2005-06-16       Impact factor: 47.728

Review 4.  Molecular model for telomeric heterochromatin in yeast.

Authors:  M Grunstein
Journal:  Curr Opin Cell Biol       Date:  1997-06       Impact factor: 8.382

5.  The Yaf9 component of the SWR1 and NuA4 complexes is required for proper gene expression, histone H4 acetylation, and Htz1 replacement near telomeres.

Authors:  Haiying Zhang; Daniel O Richardson; Douglas N Roberts; Rhea Utley; Hediye Erdjument-Bromage; Paul Tempst; Jacques Côté; Bradley R Cairns
Journal:  Mol Cell Biol       Date:  2004-11       Impact factor: 4.272

6.  Evidence for nucleosome depletion at active regulatory regions genome-wide.

Authors:  Cheol-Koo Lee; Yoichiro Shibata; Bhargavi Rao; Brian D Strahl; Jason D Lieb
Journal:  Nat Genet       Date:  2004-07-11       Impact factor: 38.330

7.  Regulation of chromosome stability by the histone H2A variant Htz1, the Swr1 chromatin remodeling complex, and the histone acetyltransferase NuA4.

Authors:  Nevan J Krogan; Kristin Baetz; Michael-Christopher Keogh; Nira Datta; Chika Sawa; Trevor C Y Kwok; Natalie J Thompson; Michael G Davey; Jeff Pootoolal; Timothy R Hughes; Andrew Emili; Stephen Buratowski; Philip Hieter; Jack F Greenblatt
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-07       Impact factor: 11.205

8.  Mapping global histone acetylation patterns to gene expression.

Authors:  Siavash K Kurdistani; Saeed Tavazoie; Michael Grunstein
Journal:  Cell       Date:  2004-06-11       Impact factor: 41.582

9.  The replacement histone H2A.Z in a hyperacetylated form is a feature of active genes in the chicken.

Authors:  Kimberley Bruce; Fiona A Myers; Evangelia Mantouvalou; Pascal Lefevre; Ian Greaves; Constanze Bonifer; David J Tremethick; Alan W Thorne; Colyn Crane-Robinson
Journal:  Nucleic Acids Res       Date:  2005-10-04       Impact factor: 16.971

10.  Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach.

Authors:  Olivier Elemento; Saeed Tavazoie
Journal:  Genome Biol       Date:  2005-01-26       Impact factor: 13.583

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  9 in total

1.  Early evolution of histone genes: prevalence of an 'orphon' H1 lineage in protostomes and birth-and-death process in the H2A family.

Authors:  Rodrigo González-Romero; Juan Ausió; Josefina Méndez; José M Eirín-López
Journal:  J Mol Evol       Date:  2008-04-29       Impact factor: 2.395

2.  Toxoplasma H2A variants reveal novel insights into nucleosome composition and functions for this histone family.

Authors:  Maria C Dalmasso; David O Onyango; Arunasalam Naguleswaran; William J Sullivan; Sergio O Angel
Journal:  J Mol Biol       Date:  2009-07-14       Impact factor: 5.469

3.  N terminus of Swr1 binds to histone H2AZ and provides a platform for subunit assembly in the chromatin remodeling complex.

Authors:  Wei-Hua Wu; Chwen-Huey Wu; Andreas Ladurner; Gaku Mizuguchi; Debbie Wei; Hua Xiao; Ed Luk; Anand Ranjan; Carl Wu
Journal:  J Biol Chem       Date:  2008-12-16       Impact factor: 5.157

4.  SWI/SNF-like chromatin remodeling factor Fun30 supports point centromere function in S. cerevisiae.

Authors:  Mickaël Durand-Dubief; William Ryan Will; Edoardo Petrini; Delphine Theodorou; Rachael R Harris; Margaret R Crawford; Konrad Paszkiewicz; Felix Krueger; Rosa Maria Correra; Anna T Vetter; J Ross Miller; Nicholas A Kent; Patrick Varga-Weisz
Journal:  PLoS Genet       Date:  2012-09-27       Impact factor: 5.917

5.  H2A.Z demarcates intergenic regions of the plasmodium falciparum epigenome that are dynamically marked by H3K9ac and H3K4me3.

Authors:  Richárd Bártfai; Wieteke A M Hoeijmakers; Adriana M Salcedo-Amaya; Arne H Smits; Eva Janssen-Megens; Anita Kaan; Moritz Treeck; Tim-Wolf Gilberger; Kees-Jan Françoijs; Hendrik G Stunnenberg
Journal:  PLoS Pathog       Date:  2010-12-16       Impact factor: 6.823

6.  Genomic organization of H2Av containing nucleosomes in Drosophila heterochromatin.

Authors:  Zhenhai Zhang; B Franklin Pugh
Journal:  PLoS One       Date:  2011-06-27       Impact factor: 3.240

7.  Histone H2A (H2A.X and H2A.Z) variants in molluscs: molecular characterization and potential implications for chromatin dynamics.

Authors:  Rodrigo González-Romero; Ciro Rivera-Casas; Lindsay J Frehlick; Josefina Méndez; Juan Ausió; José M Eirín-López
Journal:  PLoS One       Date:  2012-01-11       Impact factor: 3.240

Review 8.  Histone H2A.Z deregulation in prostate cancer. Cause or effect?

Authors:  Deanna Dryhurst; Juan Ausió
Journal:  Cancer Metastasis Rev       Date:  2014-09       Impact factor: 9.264

9.  The evolutionary differentiation of two histone H2A.Z variants in chordates (H2A.Z-1 and H2A.Z-2) is mediated by a stepwise mutation process that affects three amino acid residues.

Authors:  José M Eirín-López; Rodrigo González-Romero; Deanna Dryhurst; Toyotaka Ishibashi; Juan Ausió
Journal:  BMC Evol Biol       Date:  2009-02-04       Impact factor: 3.260

  9 in total

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