Literature DB >> 18633500

Single base interrogation by a fluorescent nucleotide: each of the four DNA bases identified by fluorescence spectroscopy.

Pavol Cekan1, Snorri Th Sigurdsson.   

Abstract

Nucleoside C, which contains a rigid nitroxide spin label, is effectively reduced in DNA by sodium sulfide to the corresponding amine, yielding a fluorescent probe (Cf) that can report the identity of its base-pairing partner in duplex DNA.

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Year:  2008        PMID： 18633500     DOI： 10.1039/b801833b

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN： 1359-7345            Impact factor:   6.222


  13 in total

1.  Fluorescence Turn-On Sensing of DNA Duplex Formation by a Tricyclic Cytidine Analogue.

Authors:  Dillon D Burns; Kristine L Teppang; Raymond W Lee; Melissa E Lokensgard; Byron W Purse
Journal:  J Am Chem Soc       Date:  2017-01-20       Impact factor: 15.419

Review 2.  Fluorescent analogs of biomolecular building blocks: design, properties, and applications.

Authors:  Renatus W Sinkeldam; Nicholas J Greco; Yitzhak Tor
Journal:  Chem Rev       Date:  2010-05-12       Impact factor: 60.622

3.  Structure guided fluorescence labeling reveals a two-step binding mechanism of neomycin to its RNA aptamer.

Authors:  Henrik Gustmann; Anna-Lena J Segler; Dnyaneshwar B Gophane; Andreas J Reuss; Christian Grünewald; Markus Braun; Julia E Weigand; Snorri Th Sigurdsson; Josef Wachtveitl
Journal:  Nucleic Acids Res       Date:  2019-01-10       Impact factor: 16.971

Review 4.  Fluorescent nucleobases as tools for studying DNA and RNA.

Authors:  Wang Xu; Ke Min Chan; Eric T Kool
Journal:  Nat Chem       Date:  2017-10-16       Impact factor: 24.427

5.  Conformational equilibria of bulged sites in duplex DNA studied by EPR spectroscopy.

Authors:  Alyssa L Smith; Pavol Cekan; Greg P Brewood; Tamara M Okonogi; Saba Alemayehu; Eric J Hustedt; Albert S Benight; Snorri Th Sigurdsson; Bruce H Robinson
Journal:  J Phys Chem B       Date:  2009-03-05       Impact factor: 2.991

6.  High density labeling of polymerase chain reaction products with the fluorescent base analogue tCo.

Authors:  Gudrun Stengel; Milan Urban; Byron W Purse; Robert D Kuchta
Journal:  Anal Chem       Date:  2009-11-01       Impact factor: 6.986

7.  Crystal structure of a DNA containing the planar, phenoxazine-derived bi-functional spectroscopic probe C.

Authors:  Thomas E Edwards; Pavol Cekan; Gunnar W Reginsson; Sandip A Shelke; Adrian R Ferré-D'Amaré; Olav Schiemann; Snorri Th Sigurdsson
Journal:  Nucleic Acids Res       Date:  2011-01-19       Impact factor: 16.971

8.  Rigid spin-labeled nucleoside C: a nonperturbing EPR probe of nucleic acid conformation.

Authors:  Pavol Cekan; Alyssa L Smith; Nivrutti Barhate; Bruce H Robinson; Snorri Th Sigurdsson
Journal:  Nucleic Acids Res       Date:  2008-09-19       Impact factor: 16.971

9.  Highly efficient incorporation of the fluorescent nucleotide analogs tC and tCO by Klenow fragment.

Authors:  Peter Sandin; Gudrun Stengel; Thomas Ljungdahl; Karl Börjesson; Bertil Macao; L Marcus Wilhelmsson
Journal:  Nucleic Acids Res       Date:  2009-04-28       Impact factor: 16.971

10.  Folding of the cocaine aptamer studied by EPR and fluorescence spectroscopies using the bifunctional spectroscopic probe Ç.

Authors:  Pavol Cekan; Elvar Orn Jonsson; Snorri Th Sigurdsson
Journal:  Nucleic Acids Res       Date:  2009-04-30       Impact factor: 16.971
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