Literature DB >> 18633483

Mass spectrometric analysis of cross-linking sites for the structure of proteins and protein complexes.

Young Jin Lee1.   

Abstract

Mass spectrometry has become the method of choice to detect and quantify the minute amounts of proteins at the genomic scale. It has recently been adopted for three dimensional structure analyses of proteins or protein complexes by chemically cross-linking their intact forms and analyzing the cross-linked pieces after digestion. This highlight provides an overview of the technology with a focus on advances in the last two years. This cross-linking mass spectrometry has a great potential to become a powerful tool to supplement current X-ray and NMR method of protein structure analysis.

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Year:  2008        PMID: 18633483     DOI: 10.1039/b801810c

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  31 in total

1.  In vivo application of photocleavable protein interaction reporter technology.

Authors:  Li Yang; Chunxiang Zheng; Chad R Weisbrod; Xiaoting Tang; Gerhard R Munske; Michael R Hoopmann; Jimmy K Eng; James E Bruce
Journal:  J Proteome Res       Date:  2012-01-09       Impact factor: 4.466

2.  StavroX--a software for analyzing crosslinked products in protein interaction studies.

Authors:  Michael Götze; Jens Pettelkau; Sabine Schaks; Konstanze Bosse; Christian H Ihling; Fabian Krauth; Romy Fritzsche; Uwe Kühn; Andrea Sinz
Journal:  J Am Soc Mass Spectrom       Date:  2011-10-25       Impact factor: 3.109

3.  Quaternary diamines as mass spectrometry cleavable crosslinkers for protein interactions.

Authors:  Billy Clifford-Nunn; H D Hollis Showalter; Philip C Andrews
Journal:  J Am Soc Mass Spectrom       Date:  2011-12-01       Impact factor: 3.109

4.  Use of proteinase K nonspecific digestion for selective and comprehensive identification of interpeptide cross-links: application to prion proteins.

Authors:  Evgeniy V Petrotchenko; Jason J Serpa; Darryl B Hardie; Mark Berjanskii; Bow P Suriyamongkol; David S Wishart; Christoph H Borchers
Journal:  Mol Cell Proteomics       Date:  2012-03-21       Impact factor: 5.911

5.  Topographic studies of the GroEL-GroES chaperonin complex by chemical cross-linking using diformyl ethynylbenzene: the power of high resolution electron transfer dissociation for determination of both peptide sequences and their attachment sites.

Authors:  Michael J Trnka; A L Burlingame
Journal:  Mol Cell Proteomics       Date:  2010-09-02       Impact factor: 5.911

6.  Traveling-wave ion mobility mass spectrometry analysis of isomeric modified peptides arising from chemical cross-linking.

Authors:  Luiz F A Santos; Amadeu H Iglesias; Eduardo J Pilau; Alexandre F Gomes; Fabio C Gozzo
Journal:  J Am Soc Mass Spectrom       Date:  2010-09-21       Impact factor: 3.109

7.  Photo-assisted peptide enrichment in protein complex cross-linking analysis of a model homodimeric protein using mass spectrometry.

Authors:  Funing Yan; Fa-Yun Che; Edward Nieves; Louis M Weiss; Ruth H Angeletti; Andras Fiser
Journal:  Proteomics       Date:  2011-09-06       Impact factor: 3.984

8.  Structural analysis of guanylyl cyclase-activating protein-2 (GCAP-2) homodimer by stable isotope-labeling, chemical cross-linking, and mass spectrometry.

Authors:  Jens Pettelkau; Iris Thondorf; Stephan Theisgen; Hauke Lilie; Thomas Schröder; Christian Arlt; Christian H Ihling; Andrea Sinz
Journal:  J Am Soc Mass Spectrom       Date:  2013-09-12       Impact factor: 3.109

Review 9.  Integrating mass spectrometry of intact protein complexes into structural proteomics.

Authors:  Suk-Joon Hyung; Brandon T Ruotolo
Journal:  Proteomics       Date:  2012-05       Impact factor: 3.984

10.  ICC-CLASS: isotopically-coded cleavable crosslinking analysis software suite.

Authors:  Evgeniy V Petrotchenko; Christoph H Borchers
Journal:  BMC Bioinformatics       Date:  2010-01-28       Impact factor: 3.169

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